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Merge pull request #73835 from markuskowa/upd-scalapack

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scalapack: 2.0.2 -> 2.1
This commit is contained in:
markuskowa 2019-11-22 22:46:27 +01:00 committed by GitHub
commit 0d2fd9018f
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GPG key ID: 4AEE18F83AFDEB23
2 changed files with 7 additions and 151 deletions
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15
pkgs/development/libraries/science/math/scalapack/default.nix
View file

@ -1,20 +1,19 @@
{ stdenv, fetchurl, cmake, openssh
{ stdenv, fetchFromGitHub, cmake, openssh
, gfortran, mpi, openblasCompat
} :
stdenv.mkDerivation rec {
pname = "scalapack";
version = "2.0.2";
version = "2.1";
src = fetchurl {
url = "http://www.netlib.org/scalapack/scalapack-${version}.tgz";
sha256 = "0p1r61ss1fq0bs8ynnx7xq4wwsdvs32ljvwjnx6yxr8gd6pawx0c";
src = fetchFromGitHub {
owner = "Reference-ScaLAPACK";
repo = pname;
rev = "v${version}";
sha256 = "042q9kc383h7y0had9a37702z4s0szavss063ljvfdsbjy07gzb1";
};
# patch to rename outdated MPI functions
patches = [ ./openmpi4.patch ];
nativeBuildInputs = [ cmake openssh ];
buildInputs = [ mpi gfortran openblasCompat ];

143
pkgs/development/libraries/science/math/scalapack/openmpi4.patch
View file

@ -1,143 +0,0 @@
diff --git a/BLACS/SRC/blacs_get_.c b/BLACS/SRC/blacs_get_.c
index e979767..d4b04cf 100644
--- a/BLACS/SRC/blacs_get_.c
+++ b/BLACS/SRC/blacs_get_.c
@@ -23,7 +23,7 @@ F_VOID_FUNC blacs_get_(int *ConTxt, int *what, int *val)
case SGET_MSGIDS:
if (BI_COMM_WORLD == NULL) Cblacs_pinfo(val, &val[1]);
iptr = &val[1];
- ierr=MPI_Attr_get(MPI_COMM_WORLD, MPI_TAG_UB, (BVOID **) &iptr,val);
+ ierr=MPI_Comm_get_attr(MPI_COMM_WORLD, MPI_TAG_UB, (BVOID **) &iptr,val);
val[0] = 0;
val[1] = *iptr;
break;
diff --git a/BLACS/SRC/cgamn2d_.c b/BLACS/SRC/cgamn2d_.c
index 2db6ccb..6958f32 100644
--- a/BLACS/SRC/cgamn2d_.c
+++ b/BLACS/SRC/cgamn2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC cgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/cgamx2d_.c b/BLACS/SRC/cgamx2d_.c
index 707c0b6..f802d01 100644
--- a/BLACS/SRC/cgamx2d_.c
+++ b/BLACS/SRC/cgamx2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC cgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/dgamn2d_.c b/BLACS/SRC/dgamn2d_.c
index dff23b4..a2627ac 100644
--- a/BLACS/SRC/dgamn2d_.c
+++ b/BLACS/SRC/dgamn2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC dgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/dgamx2d_.c b/BLACS/SRC/dgamx2d_.c
index a51f731..2a644d0 100644
--- a/BLACS/SRC/dgamx2d_.c
+++ b/BLACS/SRC/dgamx2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC dgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/igamn2d_.c b/BLACS/SRC/igamn2d_.c
index 16bc003..f6a7859 100644
--- a/BLACS/SRC/igamn2d_.c
+++ b/BLACS/SRC/igamn2d_.c
@@ -218,7 +218,7 @@ F_VOID_FUNC igamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/igamx2d_.c b/BLACS/SRC/igamx2d_.c
index 8165cbe..a7cfcc6 100644
--- a/BLACS/SRC/igamx2d_.c
+++ b/BLACS/SRC/igamx2d_.c
@@ -218,7 +218,7 @@ F_VOID_FUNC igamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/sgamn2d_.c b/BLACS/SRC/sgamn2d_.c
index d6c95e5..569c797 100644
--- a/BLACS/SRC/sgamn2d_.c
+++ b/BLACS/SRC/sgamn2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC sgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/sgamx2d_.c b/BLACS/SRC/sgamx2d_.c
index 4b0af6f..8897ece 100644
--- a/BLACS/SRC/sgamx2d_.c
+++ b/BLACS/SRC/sgamx2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC sgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/zgamn2d_.c b/BLACS/SRC/zgamn2d_.c
index 9de2b23..37897df 100644
--- a/BLACS/SRC/zgamn2d_.c
+++ b/BLACS/SRC/zgamn2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC zgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/zgamx2d_.c b/BLACS/SRC/zgamx2d_.c
index 414c381..0e9d474 100644
--- a/BLACS/SRC/zgamx2d_.c
+++ b/BLACS/SRC/zgamx2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC zgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;