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jmol: made it runnable

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Katona László 2017-12-04 19:53:36 +01:00 committed by Muoniurn
parent 75d8c81868
commit 329d1ba69a
1 changed files with 18 additions and 9 deletions
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27
pkgs/applications/science/chemistry/jmol/default.nix
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@ -1,9 +1,20 @@
{ stdenv { stdenv
, fetchurl , fetchurl
, unzip , unzip
, makeDesktopItem
, jre , jre
}: }:
let
desktopItem = makeDesktopItem {
name = "jmol";
exec = "jmol";
desktopName = "JMol";
genericName = "Molecular Modeler";
mimeType = "chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;";
categories = "Graphics;Education;Science;Chemistry;";
};
in
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
version = "${baseVersion}.${patchVersion}"; version = "${baseVersion}.${patchVersion}";
baseVersion = "14.29"; baseVersion = "14.29";
@ -16,19 +27,18 @@ stdenv.mkDerivation rec {
sha256 = "1ndq9am75janshrnk26334z1nmyh3k4bp20napvf2zv0lfp8k3bv"; sha256 = "1ndq9am75janshrnk26334z1nmyh3k4bp20napvf2zv0lfp8k3bv";
}; };
buildInputs = [ patchPhase = ''
jre sed -i -e "4s:.*:command=${jre}/bin/java:" -e "10s:.*:jarpath=$out/share/jmol/Jmol.jar:" -e "11,21d" jmol
]; '';
installPhase = '' installPhase = ''
mkdir -p "$out/share/jmol" mkdir -p "$out/share/jmol" "$out/bin"
mkdir -p "$out/bin"
${unzip}/bin/unzip jsmol.zip -d "$out/share/" ${unzip}/bin/unzip jsmol.zip -d "$out/share/"
sed -i -e 's|command=java|command=${jre}/bin/java|' jmol.sh
cp *.jar jmol.sh "$out/share/jmol" cp *.jar jmol.sh "$out/share/jmol"
ln -s $out/share/jmol/jmol.sh "$out/bin/jmol" cp -r ${desktopItem}/share/applications $out/share
cp jmol $out/bin
''; '';
enableParallelBuilding = true; enableParallelBuilding = true;
@ -38,7 +48,6 @@ stdenv.mkDerivation rec {
homepage = https://sourceforge.net/projects/jmol; homepage = https://sourceforge.net/projects/jmol;
license = licenses.lgpl2; license = licenses.lgpl2;
platforms = platforms.all; platforms = platforms.all;
maintainers = with maintainers; [ timokau ]; maintainers = with maintainers; [ timokau mounium ];
}; };
} }