From 36fc26c0fc221e84529c5d0e8ebed47bca0a9e4e Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Wed, 5 Aug 2015 21:21:41 +0200 Subject: [PATCH] R: regenerate CRAN and BIOC packages --- pkgs/development/r-modules/bioc-packages.nix | 87 +++--- pkgs/development/r-modules/cran-packages.nix | 292 ++++++++++--------- 2 files changed, 206 insertions(+), 173 deletions(-) diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 9b609a915aa3..2501cd9662b2 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -26,7 +26,7 @@ AnalysisPageServer = derive { name="AnalysisPageServer"; version="1.1.3"; sha256 AnnotationDbi = derive { name="AnnotationDbi"; version="1.31.17"; sha256="04xkhqnr9hmgxihfhn35a6s68s8x5layl7mf5whwhwxmlcd76lx4"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; }; AnnotationForge = derive { name="AnnotationForge"; version="1.11.15"; sha256="02z3kxqcn87ykdsxfzs9j0qzpjkb2k79sz89lxrggk24jxk0rr35"; depends=[AnnotationDbi Biobase BiocGenerics DBI RSQLite S4Vectors]; }; AnnotationFuncs = derive { name="AnnotationFuncs"; version="1.19.0"; sha256="1qjvkbqpyhwibdqv1c4n2z5wjnzx0h3kdas3fs33jhb597bxhl1y"; depends=[AnnotationDbi]; }; -AnnotationHub = derive { name="AnnotationHub"; version="2.1.31"; sha256="1kc60na1k0ycams6sbs9p282z4qs7y409yv60rzszr5k7vfgqbrz"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors]; }; +AnnotationHub = derive { name="AnnotationHub"; version="2.1.32"; sha256="1a8hxbj97fhg64zxfhwk107ih8y4zgq48yx6xgpzm2pdsx5x9ndx"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors]; }; ArrayExpress = derive { name="ArrayExpress"; version="1.29.1"; sha256="0gyckxsmmh81ykf7mj952h2a4z58xrf9lbnmv884hz7zj317lf83"; depends=[affy Biobase limma XML]; }; ArrayExpressHTS = derive { name="ArrayExpressHTS"; version="1.19.0"; sha256="0qyd9jhkvw4lxqjvix28yzdx08hi7vf77ynlqxcl2q1lb3gmbxar"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; ArrayTV = derive { name="ArrayTV"; version="1.7.0"; sha256="11dlq4lmzw0x8z2qrxff6xlcilp95nd71jpdvg3i5yni3ws6z5m1"; depends=[DNAcopy foreach oligoClasses]; }; @@ -57,10 +57,10 @@ BioSeqClass = derive { name="BioSeqClass"; version="1.27.0"; sha256="1pv7zibcrgb Biobase = derive { name="Biobase"; version="2.29.1"; sha256="12cckssh7x4dd8vaapp5nfc5bfcqls8k3rblcfi17z5cpi0jply6"; depends=[BiocGenerics]; }; BiocCaseStudies = derive { name="BiocCaseStudies"; version="1.31.0"; sha256="05nj9i9y8clf406bjcflj8lsrp9x9iw6my1bdqnxg3nv2krp37xn"; depends=[Biobase]; }; BiocCheck = derive { name="BiocCheck"; version="1.5.6"; sha256="0gpmrqvj31n73bqljf23wbsw3hp44hl3z1jhc2q86s3mw6hlcfip"; depends=[BiocInstaller biocViews codetools devtools graph httr knitr optparse]; }; -BiocGenerics = derive { name="BiocGenerics"; version="0.15.3"; sha256="1wk7mr3jmjr2ljqqlmnpvb3x2cflkkhsyjl2cd4ns0gld4rmmm8x"; depends=[]; }; +BiocGenerics = derive { name="BiocGenerics"; version="0.15.5"; sha256="0l8gqzqqnxx99ziamclsf4krmlyrq6fjzifh19xg7wqiyp59h41x"; depends=[]; }; BiocInstaller = derive { name="BiocInstaller"; version="1.19.9"; sha256="14z4wgvry2mbbv847mlns6ff0irwfpyk1yfcxbr27wmlisk14wxz"; depends=[]; }; -BiocParallel = derive { name="BiocParallel"; version="1.3.41"; sha256="1ri738840w5nprmh69k4n6lp5grw688anl6nz4xvczli3dbzampk"; depends=[futile_logger snow]; }; -BiocStyle = derive { name="BiocStyle"; version="1.7.4"; sha256="0wlydy1a3pspnyjg5vl0657z620n5vlhx99hxisskbrsr026mhmg"; depends=[]; }; +BiocParallel = derive { name="BiocParallel"; version="1.3.47"; sha256="0y3nv2ff8r2mijhljrgkky6b1vyb22iywbq38rv1ac6kbbpf680p"; depends=[futile_logger snow]; }; +BiocStyle = derive { name="BiocStyle"; version="1.7.6"; sha256="1bdsz8s74wfgbq6afihi40ra1kljf8w8vxrgna34aks49908rxnd"; depends=[]; }; Biostrings = derive { name="Biostrings"; version="2.37.2"; sha256="0j6701qgrnphsy9p34sf3s6d91j1zbd824zwv9rsfdmdffbkqq3b"; depends=[BiocGenerics IRanges S4Vectors XVector zlibbioc]; }; BitSeq = derive { name="BitSeq"; version="1.13.0"; sha256="1d397bcdyi3d35l1q1661spm3xhr7hqlsrjr5a2ybsjs3wqkf4fj"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; }; BrainStars = derive { name="BrainStars"; version="1.13.0"; sha256="07wygi0fw0ilg404gx1ifswr61w6qlg8j0vkmnsr0migm70rgzzg"; depends=[Biobase RCurl RJSONIO]; }; @@ -97,7 +97,7 @@ COHCAP = derive { name="COHCAP"; version="1.7.0"; sha256="0clr1jh4jnq54phsnl90zf COMPASS = derive { name="COMPASS"; version="1.7.2"; sha256="0c83fsrmi7d2888pa3lnln42mlbnjgvpxw337vdh3dar1185a5b0"; depends=[abind clue data_table knitr plyr RColorBrewer Rcpp scales]; }; CORREP = derive { name="CORREP"; version="1.35.0"; sha256="0hlij2ch8r3lv130hvyshb82lfqz2c7kr56bka1ghmg6jp0xf1n6"; depends=[e1071]; }; COSNet = derive { name="COSNet"; version="1.3.3"; sha256="0l9sn0cki0mxacxv0bwp3cczcl8rscx8g3lnr0r448f13j8198f4"; depends=[]; }; -CRISPRseek = derive { name="CRISPRseek"; version="1.9.3"; sha256="1k1divchymr19czc9j1l7bjmx8i48wbsxwj5n9l8gvjq1iw170r2"; depends=[BiocGenerics Biostrings BSgenome seqinr]; }; +CRISPRseek = derive { name="CRISPRseek"; version="1.9.7"; sha256="164f12s8arg1460fcsaa9l3igav4vjn4niwwpxaj19i4iar1f3pw"; depends=[BiocGenerics Biostrings BSgenome seqinr]; }; CRImage = derive { name="CRImage"; version="1.17.0"; sha256="1sab95gngwi7c333n9hnbd9fdvdy9i69pjpx5ic5799s7qr03llw"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; CSAR = derive { name="CSAR"; version="1.21.0"; sha256="1wn7zxmy5ssj2jkk2624j42yv67wdcigp5ksb6fc2kzpgnvqmxl1"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; CSSP = derive { name="CSSP"; version="1.7.0"; sha256="1ydxj358sfaygzjvh0b042p7gymjyl7nr5cnxrh8c7x2mv2hdh4d"; depends=[]; }; @@ -111,7 +111,7 @@ ChAMP = derive { name="ChAMP"; version="1.7.0"; sha256="0ll50qyq9k8x4bv30dap6g6l ChIPQC = derive { name="ChIPQC"; version="1.5.2"; sha256="0g630lpzwfbg5hgicg0s906a3a6gidswmidszx0hmn3479fah74m"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors]; }; ChIPXpress = derive { name="ChIPXpress"; version="1.11.0"; sha256="11aifr69ss1hakrhba985bwz6k1sqkpzvv7gnzn8cgqnzxyr2i6b"; depends=[affy biganalytics bigmemory Biobase frma GEOquery]; }; ChIPpeakAnno = derive { name="ChIPpeakAnno"; version="3.3.2"; sha256="0ww3ddnvdc561lhz27h8n3ywi1xpx1cbsqk2i8m5rkpykkkkr2dh"; depends=[AnnotationDbi BiocGenerics BiocInstaller biomaRt Biostrings BSgenome GenomicFeatures GenomicRanges graph IRanges limma multtest RBGL VennDiagram]; }; -ChIPseeker = derive { name="ChIPseeker"; version="1.5.7"; sha256="013di1c8lam36pyn0bcbaynmwwd72gb1zkw6s7p2phvlm2krprv7"; depends=[AnnotationDbi BiocGenerics boot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix plyr RColorBrewer rtracklayer S4Vectors UpSetR]; }; +ChIPseeker = derive { name="ChIPseeker"; version="1.5.8"; sha256="14prgyzrhh5r6mmrf88my8a0r3n6m45rx2ik0ajlz76avjpzdawr"; depends=[AnnotationDbi BiocGenerics boot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix plyr RColorBrewer rtracklayer S4Vectors UpSetR]; }; ChIPseqR = derive { name="ChIPseqR"; version="1.23.2"; sha256="1k1vbck7kjyzzgm0hg8hxpq6zfg71rca76q3998fcnnlzsmgvcf4"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; ChIPsim = derive { name="ChIPsim"; version="1.23.1"; sha256="13kniwvwa49n1kc9114ljn1fmzaiyb2nh33if596llql60p7nd23"; depends=[Biostrings IRanges ShortRead XVector]; }; ChemmineOB = derive { name="ChemmineOB"; version="1.7.1"; sha256="04agfsdzccsvvvis6vy1gg83gfs4nrph950v6bbzgk15ki32rsjz"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; @@ -124,7 +124,7 @@ CoCiteStats = derive { name="CoCiteStats"; version="1.41.0"; sha256="0shp06qy8cv CoGAPS = derive { name="CoGAPS"; version="2.3.2"; sha256="0jh5ij66x3isz67mj0jwypyshplk1l1p47n2hvwgq87xmjzv6c8p"; depends=[BH gplots RColorBrewer Rcpp]; }; CoRegNet = derive { name="CoRegNet"; version="1.5.0"; sha256="14yq1f005fcfmfp88h2fy05gdgbskjws11qbdh0ndx3sf93nzxm2"; depends=[arules igraph shiny]; }; CompGO = derive { name="CompGO"; version="1.5.0"; sha256="128ib7w0jxba0p32s796i864b73zjfxac56znd0v4wv4vxv3jiv6"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer]; }; -ComplexHeatmap = derive { name="ComplexHeatmap"; version="1.2.5"; sha256="1016saqj8ykm8frwn4lsma1sp9zwlmyw9dd02abhi7bgqwgsd4p3"; depends=[circlize colorspace dendextend GetoptLong RColorBrewer]; }; +ComplexHeatmap = derive { name="ComplexHeatmap"; version="1.2.6"; sha256="0n0bn69ms6ny42i0rvajhvrwivxd21spgk9s9xzqbln7758fvnw2"; depends=[circlize colorspace dendextend GetoptLong RColorBrewer]; }; ConsensusClusterPlus = derive { name="ConsensusClusterPlus"; version="1.23.0"; sha256="13iikfh234d2z4k487lb3shmnrfijygrf6gz3x481gba2psnbjyw"; depends=[Biobase cluster]; }; CopyNumber450k = derive { name="CopyNumber450k"; version="1.5.0"; sha256="0mjhmh4shgckv43zvg4yqr17jfi9p9xnc40fwy9fw9c4vjcfsvsj"; depends=[Biobase BiocGenerics DNAcopy minfi preprocessCore]; }; CopywriteR = derive { name="CopywriteR"; version="2.1.3"; sha256="0qhl3lbdf9fsm6hx45sk2nihikbzh08lbnwaz1as3wf5cx7zm08c"; depends=[BiocParallel chipseq data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; @@ -138,11 +138,11 @@ DBChIP = derive { name="DBChIP"; version="1.13.0"; sha256="0gk9kgmyp9540sq5gpbn7 DECIPHER = derive { name="DECIPHER"; version="1.15.0"; sha256="1kbdsqvkznzsk4ljy91r5ipndwxb8hhkm46qqkakgr24mia3yvl1"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; DEDS = derive { name="DEDS"; version="1.43.0"; sha256="1z049ppkrbyp0xjpiygz5i6rbxbv3vvnvspwz2vv77495v7ykj6z"; depends=[]; }; DEGraph = derive { name="DEGraph"; version="1.21.0"; sha256="17f04qngcx8y4glr5wiryi8fifbla8fxh8nb6wagnrai5x6vhzis"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; -DEGreport = derive { name="DEGreport"; version="1.4.0"; sha256="06l803iy18kkv05b4h46vmzws20c0735m6csfkn2vp3bik8xh4lp"; depends=[coda edgeR ggplot2 Nozzle_R1 plyr quantreg]; }; +DEGreport = derive { name="DEGreport"; version="1.5.0"; sha256="14mrfnmkik74yf5vml03x96brq7qlja2hpvndbffxr5a8ddb7117"; depends=[coda edgeR ggplot2 Nozzle_R1 plyr quantreg]; }; DEGseq = derive { name="DEGseq"; version="1.23.0"; sha256="0993f140wwv9z9l53f9g74x7l28bflxq7wdcbilfz7ijhh7isr7p"; depends=[qvalue samr]; }; DESeq = derive { name="DESeq"; version="1.21.0"; sha256="13f6phdf9g325dlpn38l7zrq3mzldhldil134acxi9p3l50bx23y"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; }; DESeq2 = derive { name="DESeq2"; version="1.9.26"; sha256="0b7w0csg7q5nqbrmc83rviiwhahq88zlqmxwlkz5g01w9zzkgc80"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; -DEXSeq = derive { name="DEXSeq"; version="1.15.9"; sha256="0ml4ibzhw38w0mfp0vdbbkisz40rw65yyd71q3ppj7jg4r4ch39a"; depends=[Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools statmod stringr]; }; +DEXSeq = derive { name="DEXSeq"; version="1.15.10"; sha256="1sddciia2zxn5jxpzyrg3mxcrl28kcvxfbc6nk5dwrnqd9mj53jj"; depends=[Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools statmod stringr]; }; DFP = derive { name="DFP"; version="1.27.0"; sha256="0xcipbhfzvrpbm6dh2y3lbvfbwpn4wly32sssfm702zik5wm9dy1"; depends=[Biobase]; }; DMRcaller = derive { name="DMRcaller"; version="1.1.1"; sha256="1g7q7cwivvb0m2y4fixvbxp51zfag1jv66bdlai3gawr94pcx56y"; depends=[GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; DMRcate = derive { name="DMRcate"; version="1.5.61"; sha256="0ss8zk2b1y83q49pv9fdm2rqw5hlnd189knfg1y8y0psfjhc9knp"; depends=[limma minfi]; }; @@ -161,7 +161,7 @@ DrugVsDisease = derive { name="DrugVsDisease"; version="2.9.0"; sha256="1wmw1r0x DupChecker = derive { name="DupChecker"; version="1.7.0"; sha256="02wwwnx3w8rxiassd62xr295paw8py9pqsk1396qb5k773l6bfxv"; depends=[R_utils RCurl]; }; DynDoc = derive { name="DynDoc"; version="1.47.0"; sha256="0gpmhqav4dx8p86pkh18fpmlki60zqaz00m2zhziiawigbrz41ph"; depends=[]; }; EBImage = derive { name="EBImage"; version="4.11.7"; sha256="1zddydckv3zy8wf0wh34g5yg8s1p255h66ym6lnw3l5id7v32wz8"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; }; -EBSeq = derive { name="EBSeq"; version="1.9.3"; sha256="1xqh6zjip9y0s34hxvvxvvbvadmlv84s02vvq6s63gmaf3ra51b3"; depends=[blockmodeling gplots]; }; +EBSeq = derive { name="EBSeq"; version="1.9.4"; sha256="01pzjhqx61005jbw3l3m24h10225fkml9889aqvxdxzv5n4rvc03"; depends=[blockmodeling gplots testthat]; }; EBSeqHMM = derive { name="EBSeqHMM"; version="1.3.1"; sha256="0lyf363f1wfgacrj5cyq8n3f3ssl5q400mn2q94cpai6k0qmvgs1"; depends=[EBSeq]; }; EBarrays = derive { name="EBarrays"; version="2.33.0"; sha256="1zvfqf49chiks5vmj5ki89pvy14bm1cman47n3ybba1gg8z8mw94"; depends=[Biobase cluster lattice]; }; EBcoexpress = derive { name="EBcoexpress"; version="1.13.0"; sha256="0fl0a7xasqcwvjlgf3h51akyhwpras2865m2idz1nmacm42q1w79"; depends=[EBarrays mclust minqa]; }; @@ -169,7 +169,7 @@ EDASeq = derive { name="EDASeq"; version="2.3.2"; sha256="0l1mmpy71pqqmqnx4xxn1v EDDA = derive { name="EDDA"; version="1.7.0"; sha256="0dyyhnc9v232njqnrcaq78g2m1qws30qcf6bsswq2di235ymk2g0"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; }; ELBOW = derive { name="ELBOW"; version="1.5.0"; sha256="0lnc5hw2x4p9yd561w9dwplf7q2slcaghxsh5796bmyxjxhxanpy"; depends=[]; }; ELMER = derive { name="ELMER"; version="1.00.0"; sha256="1kb7rixq02cc0cwm52acji69p89jq07zsagg7a8qva6gshs94k86"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges minfi reshape S4Vectors]; }; -EMDomics = derive { name="EMDomics"; version="1.1.1"; sha256="1a74f1ip4i8a5msdwnas5wbqhzkww1j2wr2qp0qnxcrn01mw93pg"; depends=[BiocParallel emdist ggplot2 matrixStats]; }; +EMDomics = derive { name="EMDomics"; version="1.1.2"; sha256="14gh59gq0wjhkmrclpmlixn3mbabwwq01bwq6hilf9s2s0i8qkpv"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; ENCODExplorer = derive { name="ENCODExplorer"; version="1.1.3"; sha256="054cm1ldas26gv4xn16w3i25kykwnikj4s83g7sxxdij93m5rmlb"; depends=[jsonlite RSQLite]; }; ENVISIONQuery = derive { name="ENVISIONQuery"; version="1.17.0"; sha256="1dnlw62hwysij63yc856c2sncgfwdq0rpmcds6i6wigdcfd21w8q"; depends=[rJava XML]; }; ENmix = derive { name="ENmix"; version="1.1.7"; sha256="0p5ywjnm0xknr6k7bnkhcn69870f5wwlq70yfqiah7syqmyim67d"; depends=[Biobase doParallel foreach geneplotter impute MASS minfi preprocessCore sva wateRmelon]; }; @@ -225,7 +225,7 @@ GenoView = derive { name="GenoView"; version="1.3.0"; sha256="09k9xjmx3qmsfr3a4v GenomeGraphs = derive { name="GenomeGraphs"; version="1.29.0"; sha256="0kl2gapg7hnl4zfsamb3vwmj7z0vag7vd8viwh0pwqj0pd45dswa"; depends=[biomaRt]; }; GenomeInfoDb = derive { name="GenomeInfoDb"; version="1.5.9"; sha256="1mnskpj4qb6fyg7a6qkzs6cmxzn0bjff0zzgnp17bm94vx0334zh"; depends=[BiocGenerics IRanges S4Vectors]; }; GenomicAlignments = derive { name="GenomicAlignments"; version="1.5.12"; sha256="0p1vnkh5h8w69is254zkzpj5y2a9c2yc2s7lvqhkf861x6fgkz1l"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; -GenomicFeatures = derive { name="GenomicFeatures"; version="1.21.13"; sha256="1swk94rqpvfysr3x1r61ypq9vlw1ryc0iw0x6dazfjjchaln0h07"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors]; }; +GenomicFeatures = derive { name="GenomicFeatures"; version="1.21.14"; sha256="0lnkidki4pl40878nd6bzswkdxgkz75nn052693glcvzw3qm6wg5"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors]; }; GenomicFiles = derive { name="GenomicFiles"; version="1.5.4"; sha256="13lglgxkqsxgi453dk56ry7amnv6lyddy74fnhhsqinj5ip9k3vw"; depends=[BiocGenerics BiocParallel GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; GenomicInteractions = derive { name="GenomicInteractions"; version="1.3.6"; sha256="0003hd22c3nfdb5h84pvd754gcpj3b6flzg8nhf7d0s99nzddr6a"; depends=[BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph IRanges Rsamtools rtracklayer S4Vectors stringr]; }; GenomicRanges = derive { name="GenomicRanges"; version="1.21.17"; sha256="1hp2knf1qnph62480hzmn68lxp193x4zv3b0yx2a7khj4sgy7566"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; @@ -260,7 +260,7 @@ INPower = derive { name="INPower"; version="1.5.0"; sha256="0msz24bixp7b5a83n406 INSPEcT = derive { name="INSPEcT"; version="0.99.8"; sha256="0pzh0xkh4py6rwnjqz4wqfnk2h08dp5q9gc4cgxls6gl3574i9ny"; depends=[Biobase BiocParallel deSolve GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve]; }; IONiseR = derive { name="IONiseR"; version="0.99.7"; sha256="0b4lxdhajd4mhdnfa8c3zm8n5s398arrxjig2bv6il933lhxi6ps"; depends=[BiocGenerics Biostrings data_table dplyr ggplot2 magrittr rhdf5 ShortRead tidyr XVector]; }; IPPD = derive { name="IPPD"; version="1.17.0"; sha256="0afhz5ishr1my9gnksa4dl92lfnb2fnvdpsh3n7kj4j2s8xx0crc"; depends=[bitops digest MASS Matrix XML]; }; -IRanges = derive { name="IRanges"; version="2.3.15"; sha256="0pvhvhsvqglym4ncg2aa0fbmrw32nj0givpippv43p9cywhglklw"; depends=[BiocGenerics S4Vectors]; }; +IRanges = derive { name="IRanges"; version="2.3.17"; sha256="1fjz4whvw68xw6w0anzcrympk6xfsa7rgx0mxbzlwkpj96j2805k"; depends=[BiocGenerics S4Vectors]; }; ITALICS = derive { name="ITALICS"; version="2.29.0"; sha256="16l0wq7bxi3nz8f5hggnzddhg07vrcca480ygvmi03cxajxbjr9h"; depends=[affxparser DBI GLAD oligo oligoClasses]; }; IVAS = derive { name="IVAS"; version="1.1.0"; sha256="15jnmi40bsnyf5yw86gvqppv0g8250lsi74gsjzhm7gijhlxfnrm"; depends=[AnnotationDbi BiocGenerics doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges lme4 Matrix S4Vectors]; }; Icens = derive { name="Icens"; version="1.41.0"; sha256="1vi2hnzs8z5prggswa6wzr2y53jczkgg09f4vw0pjzkzi7p8bphy"; depends=[survival]; }; @@ -294,7 +294,7 @@ MEDME = derive { name="MEDME"; version="1.29.0"; sha256="1fpi4ri134ii28nfiq2p875 MEIGOR = derive { name="MEIGOR"; version="1.3.0"; sha256="1kif7m78w0w0qv4fqfby3rknqk56zk83dds3cm4pgv2cii61i9jy"; depends=[CNORode deSolve Rsolnp snowfall]; }; MGFM = derive { name="MGFM"; version="1.3.0"; sha256="1h2bi2cchfxl0z31pgj6q6pb1jnmqvjy7jv2khp80h7sdr65356i"; depends=[annotate AnnotationDbi]; }; MIMOSA = derive { name="MIMOSA"; version="1.7.1"; sha256="1gzm90ii18vvpfd2nnl34mcvbvi49ck4hd7c5yziac8m3gx2f9f2"; depends=[Biobase coda data_table Formula ggplot2 Kmisc MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; }; -MLInterfaces = derive { name="MLInterfaces"; version="1.49.6"; sha256="1lm6sdw2svwqgnkxzy1sdl7y3mpdp42b94asn5fjxdsmmyy6im7d"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis MASS pls RColorBrewer rda rgl rpart sfsmisc shiny]; }; +MLInterfaces = derive { name="MLInterfaces"; version="1.49.8"; sha256="0asl6mibg1r2i9kmgax2qmsnj80spkn4n2pg237wxs9pm70qgpnv"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS pls RColorBrewer rda rgl rpart sfsmisc shiny]; }; MLP = derive { name="MLP"; version="1.17.0"; sha256="1wb6bzxn1paba2fxh62ldsfr4kr0nq2sy21v0pp0qwhfxndyzpdn"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; }; MLSeq = derive { name="MLSeq"; version="1.7.0"; sha256="0vc5rz4l574hmzwn3q7c4giib0lzs720j0j3alvarb3lmfzx9mhq"; depends=[Biobase caret DESeq2 edgeR limma randomForest]; }; MMDiff = derive { name="MMDiff"; version="1.9.0"; sha256="0xvnv024cv540m0jv9lrb4s5rvc0mq4gwp6wvdgpnsnqnwi9j556"; depends=[Biobase DiffBind GenomicRanges GMD IRanges Rsamtools]; }; @@ -302,7 +302,7 @@ MPFE = derive { name="MPFE"; version="1.5.0"; sha256="123a6qg761j46bs1ckd6yyr2ig MSGFgui = derive { name="MSGFgui"; version="1.3.0"; sha256="0r7izs3wpd7l9agrm3mrr3kmm00s9fzljsjxhk4pzxkjg1ran4hp"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; MSGFplus = derive { name="MSGFplus"; version="1.3.0"; sha256="0q75mygrd56kr9hrrxlmckkgvhcrgvpgvbjdxjmz6jaqp5wfbkf5"; depends=[mzID]; }; MSnID = derive { name="MSnID"; version="1.3.1"; sha256="0a0r2ikyb0spm110xzn3zzhl8g6xsvmh781d65f10l1iqnd2cqza"; depends=[Biobase data_table doParallel foreach iterators MSnbase mzID ProtGenerics R_cache Rcpp reshape2]; }; -MSnbase = derive { name="MSnbase"; version="1.17.12"; sha256="1yfkiphcn88dhjsj680jjj671jw1gxixhrg60sd8ri7j7b4z67as"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn]; }; +MSnbase = derive { name="MSnbase"; version="1.17.13"; sha256="0ijh800jbdjw4nlcx69f3dp9q5zhghvfprgpjvx407a32i47dz3k"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn]; }; MSstats = derive { name="MSstats"; version="2.7.0"; sha256="0zhv2c769biv6avb4csi7alabk76bfn0ykzwp0lc6ymzggbj9pil"; depends=[ggplot2 gplots limma lme4 marray MSnbase preprocessCore Rcpp reshape]; }; MVCClass = derive { name="MVCClass"; version="1.43.0"; sha256="1mbhfkvdkxw9xd76dd2pxk947w9wahwdsk9x1wcryrmwcdvaqqcz"; depends=[]; }; MantelCorr = derive { name="MantelCorr"; version="1.39.0"; sha256="0l255m63q9idv56svs5m5bc4izwqnm3jy2z3kka7sw4xcx13l39g"; depends=[]; }; @@ -335,7 +335,7 @@ NCIgraph = derive { name="NCIgraph"; version="1.17.0"; sha256="103p0i4y9frkvdpzh NGScopy = derive { name="NGScopy"; version="1.3.0"; sha256="09b323rx0v5dnck2dgq9rzzjk7dbpry74q6c4dkgvjvxkf7khh8m"; depends=[changepoint rbamtools Xmisc]; }; NOISeq = derive { name="NOISeq"; version="2.11.1"; sha256="13q3v2jphridbjk1059c475xgw9ywkdyqf0b6pbl3pk9l3ag9dr9"; depends=[Biobase Matrix]; }; NTW = derive { name="NTW"; version="1.19.0"; sha256="027rdvy8xpsa70g6x33v4fmzk8gyvd8p3lgf65ac36wcy120gyhl"; depends=[mvtnorm]; }; -NanoStringQCPro = derive { name="NanoStringQCPro"; version="1.1.1"; sha256="0mmbbxhxd7nh7mqzckw0as68ac0nv005liif0laadbz49y6p4rwm"; depends=[AnnotationDbi Biobase knitr NMF png RColorBrewer]; }; +NanoStringQCPro = derive { name="NanoStringQCPro"; version="1.1.2"; sha256="1xk7rzaschgb39982jkb25xaz1l547dl020nl4wn0fdmy8kalp86"; depends=[AnnotationDbi Biobase knitr NMF png RColorBrewer]; }; NarrowPeaks = derive { name="NarrowPeaks"; version="1.13.2"; sha256="0cryjprj8y1fgn5xxzsyyv4zdzv5qy8405qkj47kvjbrk0kbr97s"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; }; NetPathMiner = derive { name="NetPathMiner"; version="1.5.2"; sha256="0k3vq5l95hapw8hbc00m4pchxwzylp97y20w21g0g1yaf1cf9br0"; depends=[igraph]; }; NetSAM = derive { name="NetSAM"; version="1.9.0"; sha256="1bdch37kk1clb8cyffrlcr6d5qykk5a5ql3dfi94bw1l0w6v4fjq"; depends=[graph igraph seriation]; }; @@ -353,6 +353,7 @@ OncoSimulR = derive { name="OncoSimulR"; version="1.99.5"; sha256="0pjn2kirf1b72 OperaMate = derive { name="OperaMate"; version="0.99.6"; sha256="0xh57d82rmfcs1a6gj0qcjf585drhzns5k69bwxb7x1xw63wp4kp"; depends=[ggplot2 MASS pheatmap RDAVIDWebService]; }; OrderedList = derive { name="OrderedList"; version="1.41.0"; sha256="1cw8y5f5h15z0qwg8n4dq7g3ixx2wa332rdsb4w2qqmcqlz79bfp"; depends=[Biobase twilight]; }; OrganismDbi = derive { name="OrganismDbi"; version="1.11.42"; sha256="0y0v5ngall7iyvx2bqhfkxdnw9alkyab5f6qgpq8dpvr6pvyamyl"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller GenomicFeatures GenomicRanges graph IRanges RBGL RSQLite S4Vectors]; }; +Oscope = derive { name="Oscope"; version="0.99.1"; sha256="0kv586yv17cf61jnvglsr08175dq0qz5zif8xflnliac9whj7yvf"; depends=[BiocParallel cluster EBSeq testthat]; }; OutlierD = derive { name="OutlierD"; version="1.33.0"; sha256="0bljxmrnlqcngzzv6yxjsim7gd4icyi384vimn5gs869mq9gyrj3"; depends=[Biobase quantreg]; }; PAA = derive { name="PAA"; version="1.3.3"; sha256="1v5gw9f2glzsz05kqyvvhwzfdfj4ypwbfgy5q16lr1y64slabzq2"; depends=[e1071 limma MASS mRMRe randomForest Rcpp ROCR sva]; }; PADOG = derive { name="PADOG"; version="1.11.0"; sha256="0x84k32fmd1zrwjc4f71mq4jslh9bxr4gjbl48k1f5kl5j6hlxj3"; depends=[AnnotationDbi Biobase doRNG foreach GSA limma nlme]; }; @@ -404,7 +405,7 @@ RMassBank = derive { name="RMassBank"; version="1.11.0"; sha256="1df5kfm4gb5kz1z RNASeqPower = derive { name="RNASeqPower"; version="1.9.0"; sha256="0nn5wq81cm81wjwc43ky597fyq1l4ya36k64bp6k80ri94qx2vzg"; depends=[]; }; RNAinteract = derive { name="RNAinteract"; version="1.17.0"; sha256="03rz6xyy9f48ns0r9xcxrghikxlna8cx62rwswq2i1xkh7c5lfiy"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; RNAither = derive { name="RNAither"; version="2.17.2"; sha256="01h9l5inafhzpych76rpkrml442ld6jaxrd31ambspn9hsv8js6z"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; }; -RNAprobR = derive { name="RNAprobR"; version="1.1.1"; sha256="1n0ra0jb6y01nbdx9qbmkh5w4zy381nzkwcawvdg2bfzva1734mp"; depends=[BiocGenerics Biostrings GenomicFeatures GenomicRanges plyr Rsamtools rtracklayer]; }; +RNAprobR = derive { name="RNAprobR"; version="1.1.2"; sha256="0cjxf53q9g5g2092grbwp2z9q0sgw4bj5fism0a34w5r1varr9nb"; depends=[BiocGenerics Biostrings GenomicFeatures GenomicRanges plyr Rsamtools rtracklayer]; }; ROC = derive { name="ROC"; version="1.45.0"; sha256="1vcv5q7ylr2b1fb4vmrc8j4j7s3v5szzpkwblnfkcp2y8d03i9a1"; depends=[]; }; ROntoTools = derive { name="ROntoTools"; version="1.9.0"; sha256="07l9j4d26hn8d5ma3z19ipy4rrw29k66zb2ib8n3ba24pjm0h8w3"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; RPA = derive { name="RPA"; version="1.25.0"; sha256="1bzjb0064xdn5zk9y9dpxjdw79i8kkfb29f13balx78nq5xznxh4"; depends=[affy]; }; @@ -451,9 +452,9 @@ Rolexa = derive { name="Rolexa"; version="1.25.0"; sha256="1qrf7byimw9s5jp15zmwq RpsiXML = derive { name="RpsiXML"; version="2.11.0"; sha256="0rvma7vynfh5sjhqnbpagilq54dh0wrvvb3jzykwmrak0dbyk7zh"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; Rqc = derive { name="Rqc"; version="1.3.1"; sha256="02kc0ki021m4hxhzlmxfrb9p7p2ibdqan5hr9h67vd2dcnp9yaij"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings ggplot2 IRanges knitr markdown plyr reshape2 S4Vectors ShortRead]; }; Rsamtools = derive { name="Rsamtools"; version="1.21.14"; sha256="1s2xwz0njbml9x0yw08kk8ykbr5zgzfy5glhzkdhcdfdz7m19ma9"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; }; -Rsubread = derive { name="Rsubread"; version="1.19.2"; sha256="1xcj13mzw7a8q93kimr61kcl2xvr0mdzvrrqi4j3psbcyf5zn86k"; depends=[]; }; +Rsubread = derive { name="Rsubread"; version="1.19.3"; sha256="1qb43g5868m3590p1kzb1g5dcl1dkpggk8qq2lnmbw5v761ryamp"; depends=[]; }; Rtreemix = derive { name="Rtreemix"; version="1.31.0"; sha256="1z08y8qhc3sv4pwvji4pks46hxpcpwb9yx8y0927bc96a8mqgax4"; depends=[Biobase graph Hmisc]; }; -S4Vectors = derive { name="S4Vectors"; version="0.7.10"; sha256="15hyi728raya0x0fl0pp58kk6w4chvx7xv2f7kmp1432pkgvif9p"; depends=[BiocGenerics]; }; +S4Vectors = derive { name="S4Vectors"; version="0.7.12"; sha256="1ym0kph98ab7rdm8b2h3g8zhx92dax7c2nbdmkrahfnldiq60sgn"; depends=[BiocGenerics]; }; SAGx = derive { name="SAGx"; version="1.43.0"; sha256="111pgl7rzmscgadkbivwa736gpyw1z7zkcj648zq3jhqix569dvd"; depends=[Biobase multtest]; }; SANTA = derive { name="SANTA"; version="2.6.0"; sha256="0zx9azk7j82bzq424rf42nsaw05qyfgzdsy38h6r352mfbmip2dl"; depends=[igraph Matrix snow]; }; SBMLR = derive { name="SBMLR"; version="1.65.0"; sha256="1nmw5c32ka6l12cid54mc4diahjhmyg6fngsd646v70rbzgffn7q"; depends=[deSolve XML]; }; @@ -468,12 +469,12 @@ SLGI = derive { name="SLGI"; version="1.29.0"; sha256="0jhi3nmgnqf8qix90kpz8gqib SLqPCR = derive { name="SLqPCR"; version="1.35.0"; sha256="1p35xgwf3i8ksznz1gi3bddj0816hdljamcb7smdrq0md5fqmpzb"; depends=[]; }; SMAP = derive { name="SMAP"; version="1.33.0"; sha256="0znl289fclws2vnqgpjnrl8b0s5q4cna3ps3il5783vr64ir88cg"; depends=[]; }; SNAGEE = derive { name="SNAGEE"; version="1.9.0"; sha256="0sn5b8ah9idbz63y1rjx8brz3h58zvh2sk59l4i48nvrm38g169r"; depends=[]; }; -SNPRelate = derive { name="SNPRelate"; version="1.3.7"; sha256="04bgql78gwrprj445hkrmrl94ba2dxih48xgbyxhp4ifx5v97cyi"; depends=[gdsfmt]; }; +SNPRelate = derive { name="SNPRelate"; version="1.3.8"; sha256="0rmqx5s4748jpcbqjjpkm4snkvbs8c0xpdm5qfg18cgkx3jbpxpr"; depends=[gdsfmt]; }; SNPchip = derive { name="SNPchip"; version="2.15.2"; sha256="1px5ifdsly1z8iwd22vj2xb4pk5jhsa3h2z31scw37b0v4daks50"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses SummarizedExperiment]; }; SPEM = derive { name="SPEM"; version="1.9.0"; sha256="09klaxlz1ff77jhjsr95g3s4b5m285zf3fl9w4mv5pc8r1viqplf"; depends=[Biobase Rsolnp]; }; SPIA = derive { name="SPIA"; version="2.21.0"; sha256="0v8m9wfl2kqzzl3k0v7lr7g33ymdnmqi9r2fqyb42mggpq5pwxlm"; depends=[KEGGgraph]; }; SQUADD = derive { name="SQUADD"; version="1.19.0"; sha256="0xss3vhn6471z44gd44i8j5bni8471nb1sq3cx99f2gyk817nxp8"; depends=[RColorBrewer]; }; -SRAdb = derive { name="SRAdb"; version="1.23.0"; sha256="042y06ds1jdj26jzi51wxb6mlmlr751jyf7ggjaq7zrz267dmj76"; depends=[GEOquery graph RCurl RSQLite]; }; +SRAdb = derive { name="SRAdb"; version="1.25.0"; sha256="1gkg3qyk98zc8gjlmgg34xgjmh92iy2bl9larhdv5inqv2jn3yj3"; depends=[GEOquery graph RCurl RSQLite]; }; SSPA = derive { name="SSPA"; version="2.9.0"; sha256="1kkvj3s2l6zzvv6pybx38qrnm3i5dxckx2fpc4snlx7km2w175xz"; depends=[lattice limma qvalue]; }; STAN = derive { name="STAN"; version="1.3.0"; sha256="02qg79aa0j2ns1xswdirgbpwb0dlghd0lbdxgnpmy225wgb7nak6"; depends=[Rsolnp]; }; STATegRa = derive { name="STATegRa"; version="1.3.1"; sha256="0kfwi5qimg4myx5x0gjwrkhz8cxh2hz1mvxla8yn8v8fkb3ryshj"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; @@ -482,7 +483,7 @@ SVM2CRM = derive { name="SVM2CRM"; version="1.1.0"; sha256="0k3mg9b8i406ssvkzacz SamSPECTRAL = derive { name="SamSPECTRAL"; version="1.23.4"; sha256="0fqnqffw6q5sja3jkw6ddrachs075s5s7rnpg9fli9lgax5r4rbp"; depends=[]; }; ScISI = derive { name="ScISI"; version="1.41.0"; sha256="05snqj8qphcmnkrmv42p6zs92dmi09sd06abn5ll5234my5d0vvn"; depends=[annotate AnnotationDbi apComplex RpsiXML]; }; SemDist = derive { name="SemDist"; version="1.3.0"; sha256="0dvnp3d2s7bc4jv2vm8jikyac2cd23hx7r480g2lkcaic99wbl0s"; depends=[annotate AnnotationDbi]; }; -SeqArray = derive { name="SeqArray"; version="1.9.9"; sha256="0nlzwr6v1az5apm5lipzxdjdfswjyb8kfasjrg4ndddxwmmr2ads"; depends=[Biostrings gdsfmt GenomicRanges IRanges S4Vectors VariantAnnotation]; }; +SeqArray = derive { name="SeqArray"; version="1.9.10"; sha256="0r4308fich1wwdrqfw6d6c88cq8xsyg2p8wvfnhn1ah4lng9s6z3"; depends=[Biostrings gdsfmt GenomicRanges IRanges S4Vectors VariantAnnotation]; }; SeqGSEA = derive { name="SeqGSEA"; version="1.9.0"; sha256="0znabm84qgzf9m4dk64jppn3s5vzz1sjvrdlr7s6jls8jwi8kqqi"; depends=[Biobase biomaRt DESeq doParallel]; }; SeqVarTools = derive { name="SeqVarTools"; version="1.7.1"; sha256="04xfph2iphpmlqws5xmibq1jdkclbal2nrf18w7sblqcv67cff7x"; depends=[gdsfmt GenomicRanges GWASExactHW IRanges S4Vectors SeqArray VariantAnnotation]; }; ShortRead = derive { name="ShortRead"; version="1.27.5"; sha256="0r9gmbg9fd3n6v8c0l1mjkk9x1v6qrisamm5a1nasqbg3wmhmz5k"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; }; @@ -490,7 +491,7 @@ SigCheck = derive { name="SigCheck"; version="2.1.0"; sha256="012n75gmsifvymbk20 SigFuge = derive { name="SigFuge"; version="1.7.0"; sha256="1b966n3rl4xs3q1vjgkxxfravqr02rdgwyzvr469y757qdqi1day"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; SimBindProfiles = derive { name="SimBindProfiles"; version="1.7.0"; sha256="04m7h5zil05sg9yfgjjzm1p65302fp50vxf8y1jafp1nwqialxwh"; depends=[Biobase limma mclust Ringo]; }; SomatiCA = derive { name="SomatiCA"; version="1.13.0"; sha256="06b3mz199qm2ynal8iq4kp8rv40wbc5zipzwm22nccf97krxl9a4"; depends=[DNAcopy doParallel foreach GenomicRanges IRanges lars rebmix sn]; }; -SomaticSignatures = derive { name="SomaticSignatures"; version="2.5.5"; sha256="17a74vmnxrznq7y6fafrwlc6kdrs2qf56ikgacsmp6rm7cx7fi36"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; +SomaticSignatures = derive { name="SomaticSignatures"; version="2.5.6"; sha256="17w3dszcaxpkyk9chb7bfdii9zr1hppqhgsarzls4s4p4472f7d1"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; SpacePAC = derive { name="SpacePAC"; version="1.7.0"; sha256="1ay5hlbm2x9g5mjrq5qksgrrr84vwfk49g9qb2sc9wyc46n5af6k"; depends=[iPAC]; }; SpeCond = derive { name="SpeCond"; version="1.23.0"; sha256="0nbbqazxql9mc5idvrcycrm9fkrnm2vi9zrad3awhc378ippdk8k"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; SplicingGraphs = derive { name="SplicingGraphs"; version="1.9.1"; sha256="1s3kvaxrrvfndp4imavj0r9zw0rg37cn9xwxhi5zpfd7a784z1xk"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; @@ -524,7 +525,7 @@ VariantFiltering = derive { name="VariantFiltering"; version="1.5.16"; sha256="1 VariantTools = derive { name="VariantTools"; version="1.11.0"; sha256="1yyx9l6q3v4igm2ppnrsj9c7p4p0zpkqwjyf9d7b7rqvrk9yjyrv"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges gmapR IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; Vega = derive { name="Vega"; version="1.17.0"; sha256="1c39112czlw9hgh9gmkwxhhz9kwki48k8lsfmy3hkzxqpxx61h01"; depends=[]; }; VegaMC = derive { name="VegaMC"; version="3.7.0"; sha256="046wly5sn4vwk3h4bcick8q5dpjrfjq393rqjl8y4v24iqynlyqd"; depends=[Biobase biomaRt genoset]; }; -XBSeq = derive { name="XBSeq"; version="0.99.6"; sha256="1j8hwy2wi4vmc1nnc5xij578w445vqj0v6ngz06rlbdi5kb9k7ls"; depends=[Biobase BiocGenerics DESeq2 ggplot2 locfit matrixStats pracma]; }; +XBSeq = derive { name="XBSeq"; version="0.99.7"; sha256="01vi1p5h1lin0d62mm92y745crv21qqf24kwaj0nlhny93aq45gp"; depends=[Biobase BiocGenerics Delaporte DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma]; }; XDE = derive { name="XDE"; version="2.15.0"; sha256="17i8zxb6q4wpsa8lymcnilmr39ip1a54h6rqyl3m7qa8xwb0gv50"; depends=[Biobase BiocGenerics genefilter gtools MergeMaid mvtnorm]; }; XVector = derive { name="XVector"; version="0.9.1"; sha256="0l5l45i7sx1j51s3wkab207qwbk77i8iazd26isf0yp3rsb84a4c"; depends=[BiocGenerics IRanges S4Vectors]; }; a4 = derive { name="a4"; version="1.17.0"; sha256="0pn0gm4xkngz72i92h58d0xbpcx04938x4vm0mqsilrjapchripj"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; @@ -536,7 +537,7 @@ a4Reporting = derive { name="a4Reporting"; version="1.17.0"; sha256="1fpdkw048gv aCGH = derive { name="aCGH"; version="1.47.0"; sha256="095arlryay4gdr6kva7vf9lcby60pyx5bs4vcx586zgwskzpb2ln"; depends=[Biobase cluster multtest survival]; }; acde = derive { name="acde"; version="0.99.5"; sha256="1bbsfr7a2sivb6dpn06hwj0i95wdlfxzba4a36pakx7nzn6nv76p"; depends=[boot]; }; adSplit = derive { name="adSplit"; version="1.39.0"; sha256="1jprbqwhksyp9jf05r5dbfzgn30xm16shqsf8yi9b3nr7z2swvwm"; depends=[AnnotationDbi Biobase cluster multtest]; }; -affxparser = derive { name="affxparser"; version="1.41.5"; sha256="0naiv8z07zr1xjnmimx17awnsb9dryiz4w9jx17whrjwdpddx1p5"; depends=[]; }; +affxparser = derive { name="affxparser"; version="1.41.6"; sha256="1d1jnsx3dq52yfcchnagidlsw73dk7j5pagqfzba6pa6vv8l3sl0"; depends=[]; }; affy = derive { name="affy"; version="1.47.1"; sha256="1c9ggyqhj65mj0nq9xsqfmzp4a5705qj67swjpk5bmqajxr390a3"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; }; affyContam = derive { name="affyContam"; version="1.27.0"; sha256="1hd9kchhdjcnkxlf6kcc59jb5a9v67671shvzprraa1lg4800j5x"; depends=[affy Biobase]; }; affyILM = derive { name="affyILM"; version="1.21.0"; sha256="1gvagg83p4vxp6q72s7camcg5lhxdfy7rmm3a2p2n29267xvcz5x"; depends=[affxparser affy Biobase gcrma]; }; @@ -545,7 +546,7 @@ affyPara = derive { name="affyPara"; version="1.29.0"; sha256="06382vyfjrng72hhm affyQCReport = derive { name="affyQCReport"; version="1.47.0"; sha256="09f3pbacsrjs5bv1bv3dz7jmd849rnix6pqlkszr507s6by5i47y"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; }; affycomp = derive { name="affycomp"; version="1.45.0"; sha256="0wwgijr7h2hbv2l0w5p509f70yy873w8kahs7nnhrgl4kzbjiymc"; depends=[Biobase]; }; affycoretools = derive { name="affycoretools"; version="1.41.9"; sha256="16zdm1idmssg9jp86kkfc2h2dhjz2rl6qnrbybfbkiiklj2gagq7"; depends=[affy AnnotationDbi Biobase gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools xtable]; }; -affyio = derive { name="affyio"; version="1.38.0"; sha256="0rdkbc01bgkvg4pmpv7nl8ggq3jy17ldll50xqi1yv8rx2z0m0vp"; depends=[zlibbioc]; }; +affyio = derive { name="affyio"; version="1.39.0"; sha256="07m032wbfgi06yl79waskb2h1r4qi65pzr1j2ry60cr9jv50sizc"; depends=[zlibbioc]; }; affylmGUI = derive { name="affylmGUI"; version="1.43.2"; sha256="1mkg2addri3x8vchgcdy4wih1pzagbp0i54w3nh9kf64r89m35br"; depends=[affy affyio affyPLM AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; affypdnn = derive { name="affypdnn"; version="1.43.0"; sha256="01myf9dxzgc2jgdswphinz7ap7bdaqnw0gcfk32sxbykr4g4zyiy"; depends=[affy]; }; agilp = derive { name="agilp"; version="3.1.0"; sha256="13jnq7v0qfyllbldx2abnia0rg40yxxgkq4i1whsy5qnk1fp0n77"; depends=[]; }; @@ -585,7 +586,7 @@ birta = derive { name="birta"; version="1.13.0"; sha256="01lrwg4naks85gcrlg3sk3p birte = derive { name="birte"; version="1.4.0"; sha256="0fyz2chcgcp98lk6zj21lsixmkr06hd80dbg2j25a4rx2pv6qn5s"; depends=[Biobase limma MASS nem Rcpp RcppArmadillo ridge]; }; blima = derive { name="blima"; version="1.3.0"; sha256="1i7njg1lw76717irmfbpy9pmv8hy7nzyini2wm6625cafizp5xq8"; depends=[beadarray Biobase BiocGenerics]; }; bridge = derive { name="bridge"; version="1.33.0"; sha256="06iz67amv80az14s8yim25jfsgbxhxbfifbqazsc78ip9gd7lfyv"; depends=[rama]; }; -bsseq = derive { name="bsseq"; version="1.5.4"; sha256="1hr9h4h099506id4xvh6xm9x40dv5hsiyz8rzj4dxxkq7095h9d1"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges locfit matrixStats S4Vectors scales SummarizedExperiment]; }; +bsseq = derive { name="bsseq"; version="1.5.5"; sha256="1yhrysqrbv38p7k7g8sywp6ly6prll1kgjpkk7ff9gklpgmdygkq"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges locfit matrixStats R_utils S4Vectors scales SummarizedExperiment]; }; bumphunter = derive { name="bumphunter"; version="1.9.1"; sha256="0phq9dhrj8fa253a64vwfp75j85vp9142g5gmfy1g1n861xy8r26"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; caOmicsV = derive { name="caOmicsV"; version="0.99.2"; sha256="0y96f64m0liv53vbby866v1ga5nml1506pp6ff4ax7dbg0niiwwn"; depends=[bc3net igraph]; }; canceR = derive { name="canceR"; version="1.1.3"; sha256="1cagv58133w80acjzlyvx2752ap4dhkpvsfr34306gwbvs4gin3j"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; @@ -633,7 +634,7 @@ cosmiq = derive { name="cosmiq"; version="1.3.0"; sha256="1868sxwlmaqas3w3nrw4bv cpvSNP = derive { name="cpvSNP"; version="1.1.0"; sha256="066y409zfz0bway990ygck5lf0vzl6whh212v4rpis1l9bzfv434"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; cqn = derive { name="cqn"; version="1.15.1"; sha256="1g1ip7lxs82qq0qbhnx90hxmjiypc76p1sgx7yvj5nmp6wp1m5xy"; depends=[mclust nor1mix preprocessCore quantreg]; }; crlmm = derive { name="crlmm"; version="1.27.0"; sha256="16i3ijqhwp6c2dshk8r7idrjwga3sm1qcafqz9gl4q6b04s5jvym"; depends=[affyio Biobase BiocGenerics ellipse ff foreach illuminaio lattice matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; }; -csaw = derive { name="csaw"; version="1.3.9"; sha256="10ad0nflzy5ygq7rcn5swpdhxd4rr4y65759pvhji17scsinhswp"; depends=[AnnotationDbi edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges limma Rsamtools S4Vectors SummarizedExperiment]; }; +csaw = derive { name="csaw"; version="1.3.10"; sha256="01vap3h0j9pklmdh5i90p6j9mppvyld000cbhhyj7rmx7z8bsswy"; depends=[AnnotationDbi edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges limma Rsamtools S4Vectors SummarizedExperiment]; }; ctc = derive { name="ctc"; version="1.43.0"; sha256="139rxdvyvv3wvlc5q3581y5hkjkd5smxvb606mlxjb8lww4qmcj8"; depends=[amap]; }; cummeRbund = derive { name="cummeRbund"; version="2.11.1"; sha256="0nd1a9wi2qvvdhfvkb18ql82bfzhz6fivc7wdfv90mibrd7ypb2a"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer]; }; customProDB = derive { name="customProDB"; version="1.9.4"; sha256="0ws620i6s9p477zfns0m6qpzzhrsivjziv2gv3gmy19dhfh0ln08"; depends=[AnnotationDbi biomaRt Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer stringr VariantAnnotation]; }; @@ -648,9 +649,10 @@ deltaGseg = derive { name="deltaGseg"; version="1.9.0"; sha256="0y8fw4gxmhsr5xrb derfinder = derive { name="derfinder"; version="1.3.3"; sha256="11npavkr27f3c48bp40vgn9klgmpqs2w17gl96qn5g1y2gyvrhk5"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; derfinderHelper = derive { name="derfinderHelper"; version="1.3.1"; sha256="03kijh42x1v4ix4gxs1729rifwckaz9npcrd9b3j6xsizx97b4cr"; depends=[IRanges Matrix S4Vectors]; }; derfinderPlot = derive { name="derfinderPlot"; version="1.3.4"; sha256="1f7x609sknmbn8gsxq75073vfr0qd0k9j7gfi0fxvgnm5f4lkizx"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 scales]; }; +destiny = derive { name="destiny"; version="0.99.14"; sha256="1k44mwmvrh3fyjdslk8vh2kw075nijzsviy7i0glsbj9q1lhfnzk"; depends=[Biobase BiocGenerics FNN igraph Matrix proxy Rcpp RcppEigen scatterplot3d VIM]; }; dexus = derive { name="dexus"; version="1.9.0"; sha256="1xnjs6gmzkdj1snwakq73bz8ypnxzzxh8ki9wv0ljfbfwv1j7z53"; depends=[BiocGenerics]; }; diffGeneAnalysis = derive { name="diffGeneAnalysis"; version="1.51.0"; sha256="1k5as63cd87nnigc0yzaxvhskpnbr7l1ym2bqc57zsm3bwh8xxwb"; depends=[minpack_lm]; }; -diffHic = derive { name="diffHic"; version="1.1.11"; sha256="1xc8kw489l4i4dkrsx7hihsg9cqw85y6cr956adf6mlgmgm05n16"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges IRanges limma locfit rhdf5 Rsamtools S4Vectors]; }; +diffHic = derive { name="diffHic"; version="1.1.12"; sha256="1ywa1c9g4v19w3xmgxvk202h2dd9ax3h99d4rff9xjp2ywkxy2qz"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges IRanges limma locfit rhdf5 Rsamtools S4Vectors]; }; diggit = derive { name="diggit"; version="1.1.1"; sha256="0c3zy1d9bzb6asa4clgq738h7dj6md55gclwa244qyx857b58rqv"; depends=[Biobase ks viper]; }; dks = derive { name="dks"; version="1.15.0"; sha256="1d66jfca6q8ni5vz5zh7fmxwh3y0yvl2p7gal7w55py6wvyssnl3"; depends=[cubature]; }; domainsignatures = derive { name="domainsignatures"; version="1.29.0"; sha256="1wkypbm5ldwx8y2n16fajf450pwv6zipjdk0176a5rqihaflz80l"; depends=[AnnotationDbi biomaRt prada]; }; @@ -723,8 +725,8 @@ gaggle = derive { name="gaggle"; version="1.37.0"; sha256="1429xffj08m3dgfp6z34n gaia = derive { name="gaia"; version="2.13.0"; sha256="10vpz16plzi651aj1f5h3iwz6nzrrdnl9sgx3sgv5wmks2haqij4"; depends=[]; }; gaucho = derive { name="gaucho"; version="1.5.0"; sha256="0kl8fw1n6dkqmrjp0xri3w2fhx25llrjag7j50m2xh371zfw9chc"; depends=[GA graph heatmap_plus png Rgraphviz]; }; gcrma = derive { name="gcrma"; version="2.41.0"; sha256="03ncgd26hmj4l0mnnif1cf5qg99ir66d0mafx7wamrr930m17v8x"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; }; -gdsfmt = derive { name="gdsfmt"; version="1.5.8"; sha256="1p0vr17k0vq3ck13z0xn749ma4q8r03hfvfcijhyd3kg84hxj3f6"; depends=[]; }; -geNetClassifier = derive { name="geNetClassifier"; version="1.9.2"; sha256="04k1j2hqbs75k250i8b17bb8b84mij0hyb3yk1jl1368mpn5vmhc"; depends=[Biobase e1071 EBarrays minet]; }; +gdsfmt = derive { name="gdsfmt"; version="1.5.9"; sha256="1j849lizdsyqqp8wyssk00jc0l3mqk0ya0p8ca005i11vz8rivv3"; depends=[]; }; +geNetClassifier = derive { name="geNetClassifier"; version="1.9.3"; sha256="1vcbh910g6hsgqian6kf4vd62bf16m3bbycg7rn69rd5nhyn9b8x"; depends=[Biobase e1071 EBarrays minet]; }; geecc = derive { name="geecc"; version="1.3.0"; sha256="0s955yg31papyny42nnqq711hawk5nn3dqgsf24ldz93vjiif9dr"; depends=[gplots hypergea MASS]; }; genArise = derive { name="genArise"; version="1.45.0"; sha256="07xyy6wa22sa0ziqvy1dvpmpq11j56aw70kvj834da003yvabmg1"; depends=[locfit tkrplot xtable]; }; geneRecommender = derive { name="geneRecommender"; version="1.41.0"; sha256="0c06xg7jbcn4lnrkwgwwdjq383a7d34svf9cdqlaz5fc662nl5v0"; depends=[Biobase]; }; @@ -738,11 +740,11 @@ genomeIntervals = derive { name="genomeIntervals"; version="1.25.3"; sha256="14q genomes = derive { name="genomes"; version="2.15.0"; sha256="1a172fz97b6xg4w91dcjbdr9kx0grzf71qn2j7zlyz52dcqppybb"; depends=[Biostrings GenomicRanges IRanges RCurl XML]; }; genoset = derive { name="genoset"; version="1.23.5"; sha256="1vs1yffrjmqz70qc9rbzrabv7271jrqyscb43g3dw5q1mjwifjvn"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; genotypeeval = derive { name="genotypeeval"; version="0.99.3"; sha256="1a0dxfdlcdxmsih8imhvd4mk40lzg9p8sryccqmycw360nwbxh1h"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; -gespeR = derive { name="gespeR"; version="1.1.0"; sha256="0hp2pw4z5kgj4av339v7r43is082c47ms422pwwa5f2pljijz2z6"; depends=[Biobase biomaRt cellHTS2 doParallel foreach ggplot2 glmnet Matrix reshape2]; }; +gespeR = derive { name="gespeR"; version="1.1.2"; sha256="1mfsy2jca89qh22l95y8cd6bjgdss0p1zhprh87jq973w2saj1kf"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; ggbio = derive { name="ggbio"; version="1.17.2"; sha256="09ffhppri2ibprpwps0zxsrpvbrymsnycriy4709x2ldp1ifjn9l"; depends=[Biobase BiocGenerics Biostrings biovizBase BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; -ggtree = derive { name="ggtree"; version="1.1.10"; sha256="1p2cc500swcnfv5xa883dq60lgfx9lc080hjydn7zac0k2vvv42r"; depends=[ape Biostrings colorspace EBImage ggplot2 gridExtra jsonlite magrittr reshape2]; }; +ggtree = derive { name="ggtree"; version="1.1.13"; sha256="1vbv7qawd3zrppxlgy2gjf31q1v74ww8r2cn4w3q5dlv883pxcvm"; depends=[ape Biostrings colorspace EBImage ggplot2 gridExtra jsonlite magrittr reshape2]; }; girafe = derive { name="girafe"; version="1.21.0"; sha256="11j9aiy6s5cdhwc9591vv344qnwlgn4hvwlp2rx47gccrnxxaqxi"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; -globaltest = derive { name="globaltest"; version="5.23.0"; sha256="1cwgqq5i3v6pp5kp4qi0jxqfh09zgaj719mk4kci3wxb18dc6ql7"; depends=[annotate AnnotationDbi Biobase multtest survival]; }; +globaltest = derive { name="globaltest"; version="5.23.1"; sha256="1zcyiixjia9lznaaksfb6mnwpsa4nsqzv92l86kgrvq9a5655pzd"; depends=[annotate AnnotationDbi Biobase survival]; }; gmapR = derive { name="gmapR"; version="1.11.0"; sha256="0vn5iz44gcp4k0y5y4pjw6m60w75k82kv25hmnjshh8cpcwqkxkp"; depends=[Biobase BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; goProfiles = derive { name="goProfiles"; version="1.31.0"; sha256="0nnc5idd3p969nhcsw2bjv7ws1qlb30sywhvpy8kcvk64wzz4jgw"; depends=[AnnotationDbi Biobase]; }; goTools = derive { name="goTools"; version="1.43.0"; sha256="104xj0q1151ch0b4sswnky6shscx6fps25ycmig1s1ingd8dqnby"; depends=[AnnotationDbi]; }; @@ -829,7 +831,7 @@ metabomxtr = derive { name="metabomxtr"; version="1.3.2"; sha256="0wbpb79k9026ql metagene = derive { name="metagene"; version="2.1.0"; sha256="0fk7cgf96g1ax009g6f45jppb0w80akv5n3iwaaryy5b9pvsfk21"; depends=[BiocParallel biomaRt GenomicAlignments GenomicRanges ggplot2 gplots muStat R6 Rsamtools rtracklayer]; }; metagenomeSeq = derive { name="metagenomeSeq"; version="1.11.10"; sha256="0b9vylijb6gzri61qn8wkj9si1zrgznzqhxzib1aw9y71v8y8k05"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; }; metahdep = derive { name="metahdep"; version="1.27.0"; sha256="0kjd27brcvhfqbqk9r3fclbzf2np2zj88gi522y1c6vh3pc6fd22"; depends=[]; }; -metaseqR = derive { name="metaseqR"; version="1.9.0"; sha256="0p8bpnjm73jkng2xrypnz14rmrw1pppkrx1r88vnx33hzpkx83zx"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; +metaseqR = derive { name="metaseqR"; version="1.9.1"; sha256="1qaa28wnvafi7239lla8xfi8kxxwvi6ar684fg8f5a98s8vjk8i2"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; methVisual = derive { name="methVisual"; version="1.21.0"; sha256="18kin1ibcc4ilfh59qgb0zilhvhvs0a1gmbg0lbvj2r0kbsk1ryy"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; }; methyAnalysis = derive { name="methyAnalysis"; version="1.11.0"; sha256="0ka0svxvb76j0xkdx4pbwf2cyplihh45mb953csrapyh5r6hxwkn"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi rtracklayer S4Vectors VariantAnnotation]; }; methylMnM = derive { name="methylMnM"; version="1.7.0"; sha256="08y13kkmafn2h55wwkgs1mpskb4i2wpxzzgjdr9gb3ns06qc9799"; depends=[edgeR statmod]; }; @@ -861,7 +863,7 @@ muscle = derive { name="muscle"; version="3.11.0"; sha256="1s3apdcd0qj08bswn7smj mvGST = derive { name="mvGST"; version="1.3.0"; sha256="1chskyx9hgymxg57p6y98rw743lapssx18axvl0r9f2zsmmfz9bn"; depends=[annotate AnnotationDbi GOstats gProfileR graph Rgraphviz stringr topGO]; }; mygene = derive { name="mygene"; version="1.5.2"; sha256="0x40bnll85v94dnfpqrs8d9kx0zmdjbvgnqhcin1k9bshxqkypd9"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; mzID = derive { name="mzID"; version="1.7.1"; sha256="1pp0zfffz91g16y1kr81mbham64g00mm3q539ykj5az34g5q1fcm"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; -mzR = derive { name="mzR"; version="2.3.1"; sha256="19piyqgdxpi777nd4860d6mp0g4zzcf3wf7q7ilm99jqav9lfrn8"; depends=[Biobase BiocGenerics ProtGenerics Rcpp zlibbioc]; }; +mzR = derive { name="mzR"; version="2.3.2"; sha256="0hl3g2fn90lpka5r96cfzcw3msw8wnvq6d52p5axhb1214v5zpr6"; depends=[Biobase BiocGenerics ProtGenerics Rcpp zlibbioc]; }; ncdfFlow = derive { name="ncdfFlow"; version="2.15.3"; sha256="0xhqis5pj5m4ib4xpkgg1afxzjc1827jw5k569aijr11qmi6jjxw"; depends=[BH Biobase flowCore flowViz Rcpp RcppArmadillo zlibbioc]; }; neaGUI = derive { name="neaGUI"; version="1.7.0"; sha256="198b0vrr5qp66z4sccwy6rh8sjxpw3qjkdryygg1baxq91ra76p1"; depends=[hwriter]; }; nem = derive { name="nem"; version="2.43.0"; sha256="1d357gh8binh0fwg1z0mzjzq3nyhazg9dnnf7aqk6gjfgsjda9i8"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; }; @@ -883,7 +885,7 @@ oneChannelGUI = derive { name="oneChannelGUI"; version="1.35.0"; sha256="1diclgl ontoCAT = derive { name="ontoCAT"; version="1.21.0"; sha256="10d0a0fxg2h9gf6d1jbilxxg8irbqb1k526689qkdn2zh0qjvv04"; depends=[rJava]; }; openCyto = derive { name="openCyto"; version="1.7.4"; sha256="1q07s7rv19yahlpjpvsrhbvld6n2bf7jv7lfrgs6syfl3fwrs008"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; oposSOM = derive { name="oposSOM"; version="1.5.4"; sha256="0f06wmy1n9gl41x4x7q1fcfxaw6y6qkrmb4ypg9j6v7xjhjpfj03"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; }; -pRoloc = derive { name="pRoloc"; version="1.9.5"; sha256="0fsgz5fl29s2lkgm1dqcymw5gjc1lp4mdafqx9fa5l1rhlg81hyr"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; +pRoloc = derive { name="pRoloc"; version="1.9.6"; sha256="01gk4xnij5l4sk0c4km94i5b26vjfm8qhh3irb7xwfijank7mxd9"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; pRolocGUI = derive { name="pRolocGUI"; version="1.3.2"; sha256="08q1cavlxryx9isn2wsw8r0bv795hgzkyfx95ycxxdwh6vdvnnyl"; depends=[DT MSnbase pRoloc scales shiny]; }; paircompviz = derive { name="paircompviz"; version="1.7.0"; sha256="0sf80ji20q6kaqw2747an9b51xxwhl55yj5y7q6j68gif1ndkzl4"; depends=[Rgraphviz]; }; pandaR = derive { name="pandaR"; version="1.1.1"; sha256="0rp8qk5cn5zj0nypkhmxjpja6lkjxd3hw2dkl4gaisayhiqlfk3g"; depends=[igraph matrixStats]; }; @@ -941,7 +943,7 @@ qusage = derive { name="qusage"; version="1.9.0"; sha256="1dg8qchhqfvak5cqjs9v30 qvalue = derive { name="qvalue"; version="2.1.0"; sha256="0qgsqjb90qnf5a77n3zf5dcb5agdbj4hlk3swh1hrjg9iqcs76g0"; depends=[ggplot2 reshape2]; }; r3Cseq = derive { name="r3Cseq"; version="1.15.0"; sha256="0pi5aq3dbivk23x6axwbqa4danbsvn623icw6xvlh3i71v8m5rkw"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; rBiopaxParser = derive { name="rBiopaxParser"; version="2.7.0"; sha256="1ni8kaivdxqxv8fj2qf5vnwzmmamfd073l1p4072pnfxpn7rn0p4"; depends=[data_table XML]; }; -rCGH = derive { name="rCGH"; version="0.99.6"; sha256="1iqw7za7sy8z9flh537xdxx7gcvq6l3nsbszg68c9ja5lmlm2pmj"; depends=[aCGH affy AnnotationDbi BiocGenerics DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 lattice limma mclust plyr RUnit shiny]; }; +rCGH = derive { name="rCGH"; version="0.99.7"; sha256="1bn8rwln7zh686hz87zz3ymv5lylk64xfmwjj357q7kx5r75n2hz"; depends=[aCGH affy AnnotationDbi BiocGenerics DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 lattice limma mclust plyr RUnit shiny]; }; rGADEM = derive { name="rGADEM"; version="2.17.0"; sha256="1xwypnpf7sdaqszfmallgg2314g866xbi9q342yhds2fkiw9sp65"; depends=[Biostrings BSgenome IRanges seqLogo]; }; rGREAT = derive { name="rGREAT"; version="1.1.2"; sha256="0wwwpbxp8263jgkja6szcwqvijig8cfxdb66hvjqq69h9lqg9bkx"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; rHVDM = derive { name="rHVDM"; version="1.35.0"; sha256="0y2vm6xsdsz174xrs22p54z5f5rxqcx937yf02ilv0bnfa0r06hj"; depends=[affy Biobase minpack_lm R2HTML]; }; @@ -964,14 +966,14 @@ rgsepd = derive { name="rgsepd"; version="1.1.0"; sha256="1rvzlzh43j3sj2vrhmg13h rhdf5 = derive { name="rhdf5"; version="2.13.5"; sha256="1k2hjzzj2irs7jap7g4ys0gd3iymnnbbyvyv986y9pq68p4f1nr0"; depends=[zlibbioc]; }; riboSeqR = derive { name="riboSeqR"; version="1.3.0"; sha256="0jlh5q1hkxkfvy496hlbwfkl17k36n304yiyz9f0azq5kv7jz1y2"; depends=[abind GenomicRanges]; }; rnaSeqMap = derive { name="rnaSeqMap"; version="2.27.0"; sha256="1638vikgizcgg4bpfm61ak98smwy74dk5hyx73qjbisd49zvy5nk"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; }; -rnaseqcomp = derive { name="rnaseqcomp"; version="0.99.3"; sha256="0gyz91ayyr1834hr6jg1bnjiiiw4k75j3kn5pfmw9q8v9vg2fcsj"; depends=[RColorBrewer]; }; +rnaseqcomp = derive { name="rnaseqcomp"; version="0.99.4"; sha256="0m3xz7fnry89i7b4f51x90mwiqlv2z4d3p2r41mdm4xvwmqj4ghf"; depends=[RColorBrewer]; }; roar = derive { name="roar"; version="1.5.2"; sha256="0g0ylr49dvnbyb1kwj20hrh3y3x49n4rbdvg7mpdg1byrygcli3c"; depends=[GenomicAlignments GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; }; rols = derive { name="rols"; version="1.11.6"; sha256="0wgzvwfq677dkqzzcq071xbh6v47vkcrzw66ch1vg348pcj58z0f"; depends=[Biobase XML]; }; ropls = derive { name="ropls"; version="1.1.2"; sha256="06z0ay0rdaawyvpy7dbdpxkwa8311rlb9plk4v52v830zibamhvs"; depends=[]; }; rpx = derive { name="rpx"; version="1.5.1"; sha256="048qldpx4zsp55jkr8g8vljiyidm9kzv4p1vwh1983y38qbz882v"; depends=[RCurl XML]; }; rqubic = derive { name="rqubic"; version="1.15.0"; sha256="19n613m7x48wkrfrhnd0ab9018m5dd7rf08qjbgphakwycssfgcw"; depends=[biclust Biobase BiocGenerics]; }; rsbml = derive { name="rsbml"; version="2.27.0"; sha256="10qmv5gpgqffnr5wqh7zik0l2d1cg0c0m3xak4r4bqmsd1y4dw01"; depends=[BiocGenerics graph]; }; -rtracklayer = derive { name="rtracklayer"; version="1.29.12"; sha256="0gz3284d5cy3n0hr5w7x86lraryfi2jdg1yzj2jg6cq0hgga40c1"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; }; +rtracklayer = derive { name="rtracklayer"; version="1.29.13"; sha256="04f7fxl5k7yl4jr4la57k1z613m39zvrmrf8n5pmdy0j25lxk2z6"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; }; sRAP = derive { name="sRAP"; version="1.9.0"; sha256="0rvnq41gns4ccr6gnfw0xbbi2c2wjl14qh0yr7wj7s4yrxzqr866"; depends=[gplots pls qvalue ROCR WriteXLS]; }; sSeq = derive { name="sSeq"; version="1.7.0"; sha256="0wcw77cz47wklwsrwwimwryqmyc0lrd9mk2aawk0vx1zkqci1yca"; depends=[caTools RColorBrewer]; }; safe = derive { name="safe"; version="3.9.0"; sha256="0x1gdzpgrm4m2m64h6y5rayp64j6ckxlr081d3w46zvfb935294a"; depends=[AnnotationDbi Biobase SparseM]; }; @@ -979,7 +981,7 @@ sagenhaft = derive { name="sagenhaft"; version="1.39.1"; sha256="15aimbx6wn4il0j sangerseqR = derive { name="sangerseqR"; version="1.5.0"; sha256="0wiqaqzn6n63k1389nqj35k5wn93bq7c99gayblwjrhks0y9fll0"; depends=[Biostrings shiny]; }; sapFinder = derive { name="sapFinder"; version="1.7.0"; sha256="1xg3scw5ijm1z2l4ha4ik52s97vr10plr9ifs9rdk2l6vh8na6kh"; depends=[pheatmap Rcpp rTANDEM]; }; saps = derive { name="saps"; version="2.1.0"; sha256="0r6525n8ksxaa5dcvs9419bca1v369251psvwphfsdnfa4xg2n14"; depends=[piano reshape2 survcomp survival]; }; -savR = derive { name="savR"; version="1.7.4"; sha256="1v0rzrh27yl0fx5gcwb04yq2vln3ngisg59614qmmdppc36qf5k6"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; +savR = derive { name="savR"; version="1.7.5"; sha256="0pdkf8rkqd3fl1p8h1adfixmi0fgj1hwfbn2qn5y326w6aq6cqrs"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; scsR = derive { name="scsR"; version="1.5.0"; sha256="1n9clp1ldspxbrv4chihv1xhw2fmys13p884cmn037xhwv5b7j3r"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; }; segmentSeq = derive { name="segmentSeq"; version="2.3.1"; sha256="005b9a7rhhhcpkac8xyvl9lbzgwjbfpqr49wyn0i9j99v9zw1lfv"; depends=[baySeq GenomicRanges IRanges S4Vectors ShortRead]; }; seq2pathway = derive { name="seq2pathway"; version="1.1.2"; sha256="1ghanxmfs99h8w2fxn6im3ml7brhhx131k7djbvsm695lvxgqm7a"; depends=[biomaRt GenomicRanges GSA nnet WGCNA]; }; @@ -1025,7 +1027,7 @@ survcomp = derive { name="survcomp"; version="1.19.1"; sha256="0nl3i8pbjyvpbn7d9 sva = derive { name="sva"; version="3.15.0"; sha256="0bskn3famgz24kjaz4lrrm94vw07g5d2103h9gh5qzhajdsc2d03"; depends=[genefilter mgcv]; }; switchBox = derive { name="switchBox"; version="1.3.0"; sha256="0bnb1wqxl3rv8w5rm0jw3x22yy8q27j11hpqnd792fvsz8ssr5h1"; depends=[]; }; synapter = derive { name="synapter"; version="1.11.0"; sha256="05gv788mx1bzizr07cg5cw98i4xm3qdh8hpys4xvr06as7q65h2g"; depends=[Biobase BiocParallel Biostrings cleaver hwriter knitr lattice MSnbase multtest qvalue RColorBrewer]; }; -systemPipeR = derive { name="systemPipeR"; version="1.3.16"; sha256="1b6c0glgnjhxg454s7cx9fhlyxa0l8pd5g6mpmdhf0hi9sk48qdl"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicRanges ggplot2 GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; }; +systemPipeR = derive { name="systemPipeR"; version="1.3.20"; sha256="164xjy8vsjr1ri196xhklisiqjj3frcm3nbpvixc6kd4zjgn0r0q"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicRanges ggplot2 GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; }; tRanslatome = derive { name="tRanslatome"; version="1.7.0"; sha256="1pcr1ghwkmkpsbkqh85yninvgb2za2vdsnax5bjkdj60wfj0d5bc"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma plotrix RankProd samr sigPathway topGO]; }; ternarynet = derive { name="ternarynet"; version="1.13.0"; sha256="13pnzzlfzgkvqn323xhjvbaqzrk2fjq440ff9hjf09a53g14q7li"; depends=[igraph]; }; tigre = derive { name="tigre"; version="1.23.0"; sha256="177phidn72rcghb4mqfcr2wbfx5pz2vdw6jh7ahnki7s5q6fkldl"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; @@ -1044,6 +1046,7 @@ tspair = derive { name="tspair"; version="1.27.0"; sha256="0kx2iw2g0nji25qds5z6q tweeDEseq = derive { name="tweeDEseq"; version="1.15.0"; sha256="17mmkz0qpww2qwzk1vd5945wqpr59v091rlvn1s2013h248173vm"; depends=[cqn edgeR limma MASS]; }; twilight = derive { name="twilight"; version="1.45.0"; sha256="0dzgapk34jzxhdadraq072fcj6rwqhkx2795rbn0dkk4vazqz4sn"; depends=[Biobase]; }; unifiedWMWqPCR = derive { name="unifiedWMWqPCR"; version="1.5.0"; sha256="055yvgwqjh91cf8d2hsacnbzq2z9c911cy3qd206azqlr6qyjiip"; depends=[BiocGenerics HTqPCR]; }; +variancePartition = derive { name="variancePartition"; version="0.99.4"; sha256="1xy99saci2cihx95dy7yn92b09fan317iiacnyabsrd6z8l7ypp4"; depends=[Biobase dendextend doParallel foreach ggplot2 iterators limma lme4 reshape]; }; vbmp = derive { name="vbmp"; version="1.37.0"; sha256="1i4akvqrwj1r0ahi4vjxl7q780sa5bryj3rd2c5wg0ifd5l95h6s"; depends=[]; }; viper = derive { name="viper"; version="1.5.2"; sha256="0zcb03c469nz5ka85m54n8if1188hprh4qgdwap5zc7xgyc0lhya"; depends=[Biobase e1071 KernSmooth mixtools]; }; vsn = derive { name="vsn"; version="3.37.3"; sha256="09mzv7l5j20sx14m63q9ycpacrh2zayywiyckglfgndpc8v9wp08"; depends=[affy Biobase ggplot2 hexbin lattice limma]; }; diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index badf6b17a067..169ef5899d41 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -26,7 +26,7 @@ AID = derive { name="AID"; version="1.5"; sha256="0fpgq2ahl0mdj0sb0p39z2ksslsiwm AIM = derive { name="AIM"; version="1.01"; sha256="11lkfilxk265a7jkc1wq5xlgxa56xhg302f1q9xb7gmjnzdigb21"; depends=[survival]; }; ALDqr = derive { name="ALDqr"; version="0.5"; sha256="0294d6cjfl5m63jhrv4rbh7npwrbmmw5101jz5bbwihhj94qcxp9"; depends=[HyperbolicDist]; }; ALKr = derive { name="ALKr"; version="0.5.3.1"; sha256="09df3vx2q0sn8fwz2cc9lckzwrf2hgbglzyn376d6nkrm6gq792a"; depends=[MASS Rcpp]; }; -ALS = derive { name="ALS"; version="0.0.5"; sha256="1ryviknpf7c0v20bmc40khhmx51b83hbh9q9iwz9d694by51xryc"; depends=[Iso nnls]; }; +ALS = derive { name="ALS"; version="0.0.6"; sha256="1swrn39vy50fazkpf97r7c542gkj6mlvy8gmcxllg7mf2mqx546a"; depends=[Iso nnls]; }; ALSCPC = derive { name="ALSCPC"; version="1.0"; sha256="0ippxzq5qwb9dnpvm1kxhc0fxh83rs9ny5rcvd30w2bp632q9qdx"; depends=[]; }; ALTopt = derive { name="ALTopt"; version="0.1.0"; sha256="0vdn535x199m95gs715i42p0cf9zlj74s7xgxly7aknr0l2ypl2c"; depends=[cubature lattice]; }; AMAP_Seq = derive { name="AMAP.Seq"; version="1.0"; sha256="0z0rrzps6rm58k4m1ybg77s3w05m5zfya4x8ril78ksxsjwi3636"; depends=[]; }; @@ -136,7 +136,7 @@ BNPdensity = derive { name="BNPdensity"; version="2015.5"; sha256="0jgdc9dayc57y BNSP = derive { name="BNSP"; version="1.0.5"; sha256="0iyrmrpnx32akcfvd43jh74457l56n5n4pnlyqi9v3cjp4n95fds"; depends=[]; }; BOG = derive { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; }; BOIN = derive { name="BOIN"; version="1.2"; sha256="1vd1w3cd1l1hk63hdrn6c1hrpqwy6nkkxni1d37yj2iz7gz6wbsg"; depends=[]; }; -BRugs = derive { name="BRugs"; version="0.8-4"; sha256="0bd5m4nfj25bhjy0d96kna50h5a5a2mdxrl21c1kvxmiwxcx4wrs"; depends=[coda]; }; +BRugs = derive { name="BRugs"; version="0.8-5"; sha256="13941d3x3l9jr4xdn7xyp3yixnlzmi5xmh42isni0fc1ji86p0jm"; depends=[coda]; }; BSDA = derive { name="BSDA"; version="1.01"; sha256="06mgmwwh56bj27wdya8ln9mr3v5gb6fcca7v9s256k64i19z12yi"; depends=[e1071 lattice]; }; BSGS = derive { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; }; BSGW = derive { name="BSGW"; version="0.9"; sha256="0df5d0d0kfvwavxbxra36jjs9044q1szq1xm37dvh4wfvvv6igmb"; depends=[survival]; }; @@ -184,13 +184,14 @@ BcDiag = derive { name="BcDiag"; version="1.0.8"; sha256="1x9rkr96dgxp88z9qaw72i Bchron = derive { name="Bchron"; version="4.1.1"; sha256="0dnfz7xpmbygyarh9ai9x3xfsqiizi0zhnxm8bmkvqyb8h7zpghb"; depends=[coda ellipse hdrcde inline MASS mclust]; }; Bclim = derive { name="Bclim"; version="2.3.1"; sha256="160c9v83bpik73yjj45lr8sdgl8v4ymlkqw424ncc3lficyhvfjg"; depends=[hdrcde MASS mclust statmod]; }; Benchmarking = derive { name="Benchmarking"; version="0.26"; sha256="00w7a16lhra6rjylyj26q67mvgbc3wa27a2wmiwjz5yh7wdnh193"; depends=[lpSolveAPI ucminf]; }; -BenfordTests = derive { name="BenfordTests"; version="1.1.1"; sha256="12xzc4gq4h7p18ypbkybrzjj2qh71rgd7nzznij36yv7n6h21mlw"; depends=[]; }; +BenfordTests = derive { name="BenfordTests"; version="1.2.0"; sha256="1nnj0w0zwcmg7maqmmpixx7alvsyxva370ssc26ahg6kxy5a621w"; depends=[]; }; Bergm = derive { name="Bergm"; version="3.0.1"; sha256="1ngxqpagf8snnwdm82bg8yxbf1zpzd99g32fhw9l4gjx77kpkhl2"; depends=[coda ergm mvtnorm network]; }; BerlinData = derive { name="BerlinData"; version="1.0.1"; sha256="1shhx4pisi139sc0siawa7gp9psfgxm58qijg5m65nihv7spki75"; depends=[rjson stringr XML]; }; Bessel = derive { name="Bessel"; version="0.5-5"; sha256="1apcpwqgnbsn544x2mfjkp4136xn33pijazmbzas7lr14syl5a6b"; depends=[Rmpfr]; }; Bhat = derive { name="Bhat"; version="0.9-10"; sha256="1vg4pzrk3y0dk1kbf80mxsbz9ammkysh6bn26maiplmjagbj954v"; depends=[]; }; BiDimRegression = derive { name="BiDimRegression"; version="1.0.6"; sha256="1kgrk4xanvxqdq619ha08wwplmsn2xqygx4dziagx48iqfpp1lxj"; depends=[nlme]; }; BiSEp = derive { name="BiSEp"; version="2.0.1"; sha256="15sn9kxs0mb98kclfpif90c808a1365gdj2j332sxi07f64pb87q"; depends=[AnnotationDbi GOSemSim mclust]; }; +BiTrinA = derive { name="BiTrinA"; version="1.0"; sha256="04q3dkv5h8nrizgbw6qawwzh7v9jl0ykdxqxbp1z8cmv1r4n7z37"; depends=[diptest]; }; BiasedUrn = derive { name="BiasedUrn"; version="1.06.1"; sha256="1ra9fmymm97a2b8jsrsi98cjnnxc478zq51lx7a5pgafprcwcgkg"; depends=[]; }; BigTSP = derive { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; }; BinNonNor = derive { name="BinNonNor"; version="1.2"; sha256="15bzpi2q2428661v8z9izp942ihffgq8dgh4fsnzllvdrpqcyc41"; depends=[BB corpcor Matrix mvtnorm]; }; @@ -249,7 +250,7 @@ CDFt = derive { name="CDFt"; version="1.0.1"; sha256="0sc8ga48l3vvqfjq3ak5j1y27h CDLasso = derive { name="CDLasso"; version="1.1"; sha256="0n699y18ia2yqpk78mszgggy7jz5dybwsi2y56kdyblddcmz1yv7"; depends=[]; }; CDM = derive { name="CDM"; version="4.4-1"; sha256="0m75h7q60bzn66hrv9w2s21w7yp1qphylrfv8323srnj2q4yqi93"; depends=[lattice MASS mvtnorm plyr polycor psych Rcpp RcppArmadillo sfsmisc]; }; CDNmoney = derive { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; -CDVine = derive { name="CDVine"; version="1.2"; sha256="1qfjbzdfz2dydkfw3b0jjma4csn62177j5sgzh6rszf0nifsi97g"; depends=[igraph MASS mvtnorm]; }; +CDVine = derive { name="CDVine"; version="1.3"; sha256="0z3n9zplrmqhclq6skfg13h7mqdifphlaa8bc67q4n9ff4x697rm"; depends=[igraph MASS mvtnorm]; }; CEC = derive { name="CEC"; version="0.9.3"; sha256="05cgd281p0hxkni4nqb0d4l71aah3f3s6jxdnzgw8lqxaxz4194i"; depends=[]; }; CEGO = derive { name="CEGO"; version="1.0.1108"; sha256="0klj9g656rnfqhj36r4v8y6mv4cazlzyrvws6yqa0r61abfbxy68"; depends=[DEoptim MASS]; }; CEoptim = derive { name="CEoptim"; version="1.0"; sha256="1mrv2vhrwd7hvw67ys08nilbn3f1fp3bsvlbc8ggwyl3lw957fi9"; depends=[MASS msm]; }; @@ -300,7 +301,7 @@ CVThresh = derive { name="CVThresh"; version="1.1.1"; sha256="19d7pslzj8r3z5gn3c CVTuningCov = derive { name="CVTuningCov"; version="1.0"; sha256="1bwzis82lqwcqp2djy4bnd3vvjr47krlv3pdc5msh12wcs0xhs7n"; depends=[]; }; CVcalibration = derive { name="CVcalibration"; version="1.0-1"; sha256="0ca582fnysrldlzxc3pihsph9pvdgygdh7sfzgxvr5fc3z1jbjzb"; depends=[]; }; CaDENCE = derive { name="CaDENCE"; version="1.2.3"; sha256="1810a785czaxwfvhjnmhzqg743mgcgrdp3j1irlfl9pbli0ppidx"; depends=[pso]; }; -Cairo = derive { name="Cairo"; version="1.5-7"; sha256="0wr03kwmj2b9hamznd3jywv3x06i5phhdfl0iydh41yc9j9xvdfk"; depends=[]; }; +Cairo = derive { name="Cairo"; version="1.5-8"; sha256="1paqyb95jikbwyp1x3c8fxwla1ihp003vn53l3z9mqywxyamvjdw"; depends=[]; }; CarletonStats = derive { name="CarletonStats"; version="1.1"; sha256="18pd1hi8bnbv0sdixw746xvdg9szvng422yj12mk0k50v60403xg"; depends=[]; }; CatDyn = derive { name="CatDyn"; version="1.1-0"; sha256="0bdixcf1iwbmjd2axi6csrzms25ghdj4r6223qhk2b54wlmbzaiz"; depends=[BB optimx]; }; CateSelection = derive { name="CateSelection"; version="1.0"; sha256="194lk6anrb05gaarwdg8lj5wm6k61b4r702cja3nf3z91i8paqi7"; depends=[]; }; @@ -363,7 +364,7 @@ Conake = derive { name="Conake"; version="1.0"; sha256="1rj1rv8r53516jqhwp9xqqwj CondReg = derive { name="CondReg"; version="0.20"; sha256="1ffnrjfjcb66i9nyvidkcn4k9pcj4r7xanjwzcxcrj2qm39apkqx"; depends=[]; }; ConjointChecks = derive { name="ConjointChecks"; version="0.0.9"; sha256="097mhiz8zjmmkiiapr3zfx7v35xirg57nqp1swd72dixaa23nhr1"; depends=[]; }; ConnMatTools = derive { name="ConnMatTools"; version="0.1.5"; sha256="02cv2rlfp9shwqc9nwb8278akmwv7yvviwl23jglzsyh721dpqkr"; depends=[]; }; -ConsRank = derive { name="ConsRank"; version="0.0"; sha256="00lk128livwfbkgykgz5g3ap592m70xgi5pni0vsnm1xqhh93rrf"; depends=[gtools MASS proxy rgl]; }; +ConsRank = derive { name="ConsRank"; version="0.0.1"; sha256="04hqqc1d29yxfb53ccy1gr5qaw3jpm92zp0zvm5ps3jqw170kvxx"; depends=[gtools MASS proxy rgl]; }; ConvCalendar = derive { name="ConvCalendar"; version="1.2"; sha256="0yq9a42gw3pxxwvpbj6zz5a5zl7g5vkswq3mjjv5r28zwa3v05vc"; depends=[]; }; ConvergenceConcepts = derive { name="ConvergenceConcepts"; version="1.1"; sha256="0878fz33jxh5cf72lv0lga48wq2hqa4wz6m59111k59pzrsli344"; depends=[lattice tkrplot]; }; Copula_Markov = derive { name="Copula.Markov"; version="1.0"; sha256="028rmpihyz9xr4r305lbcbb0y22jw1szmhw5iznv5zma507grbl3"; depends=[]; }; @@ -385,12 +386,12 @@ CpGFilter = derive { name="CpGFilter"; version="1.0"; sha256="07426xlmx0ya3pi1y5 CpGassoc = derive { name="CpGassoc"; version="2.50"; sha256="052mzkcp7510dm12winmwpxz6dvy54aziff0mn3nzy0xbk5v1fw4"; depends=[nlme]; }; Cprob = derive { name="Cprob"; version="1.2.4"; sha256="0zird0l0kx2amrp4qjvlagw55pk9jrx0536gq7bvajj8avyvyykr"; depends=[geepack lattice lgtdl prodlim tpr]; }; CreditMetrics = derive { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; }; -Crossover = derive { name="Crossover"; version="0.1-14"; sha256="0d35am446z1pj7iz2zk1fvmp3xn5nhz3pgj7rwhmj77ad8vy8p8b"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; +Crossover = derive { name="Crossover"; version="0.1-15"; sha256="1g9z4ssqyb3silaprcsjsdd1bk5rsih2hvqr6rm1qb8ayqjr1sp3"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; CryptRndTest = derive { name="CryptRndTest"; version="1.0.5"; sha256="0ypqwzn9r9x7l4wzz6vqnirmjx7zrbx0jck4wpy83w1jvx02qcqv"; depends=[copula kSamples LambertW MissMech sfsmisc tseries]; }; CrypticIBDcheck = derive { name="CrypticIBDcheck"; version="0.3-1"; sha256="1lrpwgvsif1wnp19agh8fs3nhlb7prr3hhqg28fi4ikdd1l2j3r4"; depends=[car chopsticks ellipse rJPSGCS]; }; Cubist = derive { name="Cubist"; version="0.0.18"; sha256="176k9l7vrxamahvw346aysj19j7il9a2v6ka6dzmk0qq7hf3w9ka"; depends=[lattice reshape2]; }; D2C = derive { name="D2C"; version="1.2.1"; sha256="0qhq27978id0plyz9mgdi0r1sr3ixnvqm8w6hp5c2wjd1yhhh12s"; depends=[corpcor foreach gRbase lazy MASS randomForest RBGL Rgraphviz]; }; -D3M = derive { name="D3M"; version="0.31"; sha256="1q5syjip82xbb7vxja8byc8ykln2yy2riz019n3wva8lghy0rvii"; depends=[beanplot Rcpp]; }; +D3M = derive { name="D3M"; version="0.41"; sha256="12yny4a6rggaz5zfjpacsmxcj805nbkw19n26m9vr58a7zg1iwa1"; depends=[beanplot Rcpp]; }; DAAG = derive { name="DAAG"; version="1.20"; sha256="05jlsrs0frk9ky20h17c5vj9d4j28c9n0a1jww5lssacimn1d4x5"; depends=[lattice latticeExtra]; }; DAAGbio = derive { name="DAAGbio"; version="0.62"; sha256="18m4vq8vv0yi79na62nrm0cy1nlk7bg0xbddzxv5gpkmzi1i6m9s"; depends=[limma]; }; DAAGxtras = derive { name="DAAGxtras"; version="0.8-4"; sha256="18lg13mbyharidj5j7ncx8s7d72v2hcnqr00vilhf3djk2mjq7xn"; depends=[]; }; @@ -444,7 +445,7 @@ DTDA = derive { name="DTDA"; version="2.1-1"; sha256="0hi2qjcwd6zrzx87mdn1kns5f2 DTK = derive { name="DTK"; version="3.5"; sha256="0nxcvx25by2nfi47samzpfrd65qpgvcgd5hnq9psx83gv502g55l"; depends=[]; }; DTMCPack = derive { name="DTMCPack"; version="0.1-2"; sha256="0bibas5cf06qq834x9q2l2fyh6q9wrg07k8cn6almcyirzax6811"; depends=[]; }; DTR = derive { name="DTR"; version="1.6"; sha256="186qgrx9alzmj1vdy2yvfqs5xgidmwddm0zgg041s5q992cih36g"; depends=[aod ggplot2 gridExtra proto survival]; }; -DVHmetrics = derive { name="DVHmetrics"; version="0.3"; sha256="1ndrzd5q12kabpk3yj95s24kn7ri61w1h4aa50zw9qb12f5dzc98"; depends=[ggplot2 KernSmooth markdown reshape2 shiny]; }; +DVHmetrics = derive { name="DVHmetrics"; version="0.3.1"; sha256="1njvxjbfdal73b5z4wdmdw76h1f8d5i037b4yga79bc6h4b3xfk5"; depends=[ggplot2 KernSmooth markdown reshape2 shiny]; }; DYM = derive { name="DYM"; version="0.1.1"; sha256="0k6iqn1397by9pg31m3ypbnn85zv192ghsn4gpnsfhqfcp18q4d4"; depends=[]; }; Daim = derive { name="Daim"; version="1.1.0"; sha256="19s0p3a4db89i169n2jz7lf8r7pdmrksw7m3cp9n275b5h8yjimx"; depends=[rms]; }; DandEFA = derive { name="DandEFA"; version="1.5"; sha256="0d82rjkgqf4w7qg7irlqvzzav1f23i2gmygkbf8jycaa6xhli80d"; depends=[gplots polycor]; }; @@ -486,7 +487,7 @@ DiscreteInverseWeibull = derive { name="DiscreteInverseWeibull"; version="1.0.1" DiscreteLaplace = derive { name="DiscreteLaplace"; version="1.1"; sha256="1pcq4kggy1z88a0car53d0f69rx2qg7q104cr0bxi6yllrb3q0nr"; depends=[Rsolnp]; }; DiscreteWeibull = derive { name="DiscreteWeibull"; version="1.0.1"; sha256="09v34lwaahx0d30zxb4b3r84ryllz1fsmbp5wfr341b5flp20wvg"; depends=[Rsolnp]; }; DiscriMiner = derive { name="DiscriMiner"; version="0.1-29"; sha256="1ii8aa4dwfk991qdnpmkva20wvs5fqcna9030c799ybf11qpdass"; depends=[]; }; -Distance = derive { name="Distance"; version="0.9.3"; sha256="054z9pi8m8gjpax3s2hajvaik4yvfpy8qc4gmpl9bqncrk594pbv"; depends=[mrds]; }; +Distance = derive { name="Distance"; version="0.9.4"; sha256="18iip9xny2vazpah96qziqwql4hnxg2m8hyjhh8b34w29jv0nsm5"; depends=[mrds]; }; DistatisR = derive { name="DistatisR"; version="1.0"; sha256="1il00v26q68h5dd5c9lm2jblgn8hs6n0457r13mlw6r7pcj0158j"; depends=[car prettyGraphs]; }; DistributionUtils = derive { name="DistributionUtils"; version="0.5-1"; sha256="0gw531wfrjx1sxh17qh48dwbxnibgr0viga07vsp8nay7l02jap9"; depends=[RUnit]; }; DivE = derive { name="DivE"; version="1.0"; sha256="1ixkk8kd3ri78ykq178izib0vwppnbiwbpc1139rcl8f5giiwcdh"; depends=[deSolve FME rgeos sp]; }; @@ -512,6 +513,7 @@ EBglmnet = derive { name="EBglmnet"; version="3.6"; sha256="0qjwk5y9bghidha4i937 EDFIR = derive { name="EDFIR"; version="1.0"; sha256="0nv1badyg1dri6z91fvs68a72g22vdg0rpi3fkpxw527r11fvrrv"; depends=[geometry lpSolve MASS vertexenum]; }; EDISON = derive { name="EDISON"; version="1.1"; sha256="09xw4p4hwj8djq143wfdcqhr2mhwynj4ixj3ma7crhqidgal169p"; depends=[corpcor MASS]; }; EDR = derive { name="EDR"; version="0.6-5.1"; sha256="10ldygd1ymc4s9gqhhnpipggsiv4rwbgajvdk4mykkg3zmz7cbpm"; depends=[]; }; +EEM = derive { name="EEM"; version="1.0.1"; sha256="05kmys1qq2v7zj4akpbs81ss74q1zp2v7n8m5mmgj4frivzgqbzn"; depends=[colorRamps R_utils readxl reshape2 sp]; }; EFDR = derive { name="EFDR"; version="0.1.1"; sha256="0jgznwrd40g9xmvhrd7b441g79x41ppfdn6vbsbzc0k5ym1wzb1p"; depends=[doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; EGRET = derive { name="EGRET"; version="2.3.0"; sha256="07b2wxdciybvm3l579vibdprcxvzl2ym25xba7wlxmrbx37ndx5z"; depends=[dataRetrieval fields lubridate survival]; }; EIAdata = derive { name="EIAdata"; version="0.0.3"; sha256="12jgw3vi2fminwa4lszczdr4j4svn2k024462sgj1sn07a4a4z2s"; depends=[plyr XML xts zoo]; }; @@ -536,6 +538,7 @@ EMbC = derive { name="EMbC"; version="1.9.3"; sha256="189kgp6qv9dl4q1sirm3v9zqk1 ENMeval = derive { name="ENMeval"; version="0.1.1"; sha256="0g1h8dklv6rv73wwpx3vhbpnwply5lpq8x9jvl7r018x9gcvvb9m"; depends=[dismo raster rJava]; }; ENiRG = derive { name="ENiRG"; version="0.1"; sha256="1cnl1mjl5y1rc6fv7c9jw2lkm898l3flfrj3idx9v1brjzyx5xlf"; depends=[ade4 fgui gdata miniGUI R_utils raster sp spgrass6]; }; ENmisc = derive { name="ENmisc"; version="1.2-7"; sha256="07rix4nbwx3a4p2fif4wxbm0nh0qr7wbs7nfx2fblafxfzhh6jc7"; depends=[Hmisc RColorBrewer vcd]; }; +EPGLM = derive { name="EPGLM"; version="1.0"; sha256="0cijk21dl7hkd0m8dzj2nx5yzm3q1l764fyv82dr3k31c7vq7xh1"; depends=[BH MASS Rcpp RcppArmadillo]; }; EQL = derive { name="EQL"; version="1.0-0"; sha256="0lxfiizkvsfls1km1zr9v980191af6qjrxwcqsa2n6ygzcb17dp5"; depends=[lattice ttutils]; }; ERP = derive { name="ERP"; version="1.0.1"; sha256="0wy1p7pp9dvc3krylskb627rmfqaj11qvia97m88x05ydqx1fwmr"; depends=[fdrtool mnormt]; }; ES = derive { name="ES"; version="1.0"; sha256="1rapwf6kryr6allzbjk6wmxpj9idd3xlnh87rwbh6196xb7rp8lv"; depends=[]; }; @@ -553,7 +556,7 @@ EasyMARK = derive { name="EasyMARK"; version="1.0"; sha256="10slkblbyxq98c3sxgs1 EasyStrata = derive { name="EasyStrata"; version="8.6"; sha256="0agmap9lmqbpfw8ijwxmjkcqjvc1ng0jsadkqpfz71a963nkqdcl"; depends=[Cairo plotrix]; }; EbayesThresh = derive { name="EbayesThresh"; version="1.3.2"; sha256="0n7cr917jrvmgwfqki7shvz9g9zpmbz9z8hm5ax7s8nnfzphrh4g"; depends=[]; }; Ecdat = derive { name="Ecdat"; version="0.2-7"; sha256="1z9mxx3mvn3vi5drxlzss7gs7vpzg7shinl529bx4jpxqpci90jy"; depends=[Ecfun]; }; -Ecfun = derive { name="Ecfun"; version="0.1-4"; sha256="0h3351pcahrn578lz1pcb7h3chmh0vmwbn9iqll98vibck847gai"; depends=[fda gdata jpeg MASS RCurl stringi TeachingDemos tis XML]; }; +Ecfun = derive { name="Ecfun"; version="0.1-6"; sha256="1mz2smbxyjzc6vf3vhycgvjwqq6hr22vxikrl0hx185qxgwbgrxn"; depends=[fda gdata jpeg MASS RCurl stringi TeachingDemos tis XML]; }; EcoGenetics = derive { name="EcoGenetics"; version="1.2.0-2"; sha256="1c2pz2a8f57fhq0sk4jgfi4v8jwznsjaqx4jnziz3lak7gmcrwql"; depends=[ggplot2 party raster reshape2 rgdal rkt SoDA sp]; }; EcoHydRology = derive { name="EcoHydRology"; version="0.4.12"; sha256="03dzdw79s0cnnd7mv6wfxw374yf66dlcmj10xh6sh5i352697xp1"; depends=[DEoptim operators topmodel XML]; }; EcoSimR = derive { name="EcoSimR"; version="0.1.0"; sha256="13ni3vdfahqjyb9xrv7fmnbj5m5n3jwfh1bl9r0bvhi5w72kb7rj"; depends=[MASS]; }; @@ -624,7 +627,7 @@ FField = derive { name="FField"; version="0.1.0"; sha256="05q16v2vv64qhbnf2l66dw FGN = derive { name="FGN"; version="2.0-12"; sha256="0jxawb4wm1vcp0131mdnc0r24dw8sd29ih0fc2wh6ahy7mxzajqn"; depends=[akima ltsa]; }; FGSG = derive { name="FGSG"; version="1.0.2"; sha256="1r3sjhzf9gcnbcx6rqr1s555z8lcwm3fxl096md2jji336ijlk79"; depends=[]; }; FGalgorithm = derive { name="FGalgorithm"; version="1.0"; sha256="1dq6yyb3l6c9fzvk9gs6pb240xb5hvc6fh8p3qd3c91b3m289mcc"; depends=[]; }; -FHtest = derive { name="FHtest"; version="1.2"; sha256="033p90zzlgx2galzp2iwwpg29hhhgscqmqkwpr69y2ck3nj3hz0v"; depends=[interval KMsurv MASS perm survival]; }; +FHtest = derive { name="FHtest"; version="1.3"; sha256="1cay1cl1x4lias55vxc14caznggdw6j8vgqgkxfmvldnvjfljsq1"; depends=[interval KMsurv MASS perm survival]; }; FI = derive { name="FI"; version="1.0"; sha256="17qzl8qvxklpqrzsmvw4wq3lyqz3zkidr7ihxc4vdzmmz69pyh2f"; depends=[]; }; FITSio = derive { name="FITSio"; version="2.0-0"; sha256="1gf3i1q9g81gydag2gj1wsy6wi5jj2v4j3lyrnh1n2g4kxd6s3cp"; depends=[]; }; FKF = derive { name="FKF"; version="0.1.3"; sha256="01ibihca39zng4wrvhq8h28bmb2rnsjm21xy22b85kpn3mbnh7f1"; depends=[RUnit]; }; @@ -648,7 +651,7 @@ FTICRMS = derive { name="FTICRMS"; version="0.8"; sha256="0kv02mdmwflhqdrkhzb55s FWDselect = derive { name="FWDselect"; version="2.0"; sha256="12hhb2vysg3c9fzh56xy3kwhwbgcn1yx4afhlpydnavp3aclrqrg"; depends=[cvTools mgcv]; }; FacPad = derive { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; }; FactMixtAnalysis = derive { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; }; -FactoClass = derive { name="FactoClass"; version="1.1.1"; sha256="0m5108g2nhdwqqmkn04l1x0kx32ikkhcz6gki0hpj9hlzrkya5w6"; depends=[ade4 xtable]; }; +FactoClass = derive { name="FactoClass"; version="1.1.2"; sha256="0wg8n2vn586dj5g6js6c7rshsjibciyvg2j53mxgnn0f63xdb3ip"; depends=[ade4 xtable]; }; FactoMineR = derive { name="FactoMineR"; version="1.31.3"; sha256="164pxgy9sn7irk4l31nfpmdmrw9qscwzdmvzr9nc9m36nhmajvkr"; depends=[car cluster ellipse flashClust lattice leaps MASS scatterplot3d]; }; Factoshiny = derive { name="Factoshiny"; version="1.0.2"; sha256="0wwsv0frn2d6a5l5lr9qzqglznaigc23bq7nhcbfy1wlvsmimnr3"; depends=[FactoMineR shiny]; }; Fahrmeir = derive { name="Fahrmeir"; version="2015.6.25"; sha256="1ca4m3m4jip7n489yywdfvh6nlhxspg5awxi23spgfnvhrcs9k3y"; depends=[]; }; @@ -739,7 +742,7 @@ GISTools = derive { name="GISTools"; version="0.7-4"; sha256="06alb5d2k4qj344i9c GLDEX = derive { name="GLDEX"; version="2.0.0.3"; sha256="0ymarfwpm7gagq6wk40n0nsmd14r19pbqbrgigk6cvb8dc2zpbfz"; depends=[cluster]; }; GLDreg = derive { name="GLDreg"; version="1.0.3"; sha256="0d7cclmmhgaf95bw738d8hz166qsr9df33g73ihy8pla3sg5lr7q"; depends=[GLDEX]; }; GLSME = derive { name="GLSME"; version="1.0.3"; sha256="0flja5gk25k4z9hwskvdw4c1f88scc47xvc1l3d2447fkfrb0bwc"; depends=[corpcor mvtnorm]; }; -GMCM = derive { name="GMCM"; version="1.2.1"; sha256="1s45xmbx64h3sb10py8n444jpxcgsz4pc36cz3zinfq55amf8r6r"; depends=[Rcpp RcppArmadillo]; }; +GMCM = derive { name="GMCM"; version="1.2.2"; sha256="1zvhbxz1bli460c9nh2p3vx7v3a5w2jwyyyd7r8dqgxpf3xr1pzw"; depends=[Rcpp RcppArmadillo]; }; GMD = derive { name="GMD"; version="0.3.3"; sha256="0hdya8ai210wxnkfra9bzyswk3gib5fm53fs61rh0nsmg3ysdga6"; depends=[gplots]; }; GMDH = derive { name="GMDH"; version="1.1"; sha256="053x0flh1jk61ak84d7y1r22fn1s52pj5xqwlbvkc70jmfmvs141"; depends=[MASS]; }; GMMBoost = derive { name="GMMBoost"; version="1.1.2"; sha256="01q165vkdiv4qh96lha0g2g94jpnzdclbby6q43ghh9j1yrd4qzj"; depends=[magic minqa]; }; @@ -790,7 +793,7 @@ GenWin = derive { name="GenWin"; version="0.1"; sha256="0jm537i4jn3azdpvd50y9p0f GeneCycle = derive { name="GeneCycle"; version="1.1.2"; sha256="1ghdzdddbv6cnxqd08amy4c4s5jsxa637r828ygffk6z76xjr6b6"; depends=[fdrtool longitudinal MASS]; }; GeneF = derive { name="GeneF"; version="1.0"; sha256="0bizf47944b2zv9ayxb9rhrqx0ilz2xlvkw7x5vbg7l67y2g2l4d"; depends=[]; }; GeneFeST = derive { name="GeneFeST"; version="1.0.1"; sha256="0qgzjzhwf3nigfi09maywg9zkjxiicwiwiyqfcdk9gsvmp6mr4qn"; depends=[BASIX]; }; -GeneNet = derive { name="GeneNet"; version="1.2.12"; sha256="0z94ws95nvk7jx5fnrwb81925y14fash1g5pd1mmkkj8njq9kk4l"; depends=[corpcor fdrtool igraph longitudinal]; }; +GeneNet = derive { name="GeneNet"; version="1.2.13"; sha256="0w52apk0nnr8nsskf26ff7ana8xiksr8wqmkjxzwhzgg7fncm61p"; depends=[corpcor fdrtool longitudinal]; }; GeneReg = derive { name="GeneReg"; version="1.1.2"; sha256="081qc66mb17dwk886x9l2z4imklxnfs02yqql0ri9c47bpsga7wp"; depends=[igraph]; }; Geneland = derive { name="Geneland"; version="4.0.5"; sha256="1v2m8v4sy95rajjw8m9bg4yal5ay7x1k5kqjxrivm45ad546ykwh"; depends=[fields RandomFields]; }; GeneralizedHyperbolic = derive { name="GeneralizedHyperbolic"; version="0.8-1"; sha256="0rx07z5npawvsah2lhhkryzpj19sg0sl0w410gmff985ksdn285m"; depends=[DistributionUtils RUnit]; }; @@ -810,7 +813,7 @@ GlobalDeviance = derive { name="GlobalDeviance"; version="0.4"; sha256="0s318arq GlobalFit = derive { name="GlobalFit"; version="1.0"; sha256="0cx4jpr5yhjdqbvnswqjwx7542mnmk73dy99klwg8bsz0c36ii5k"; depends=[sybil]; }; GlobalOptions = derive { name="GlobalOptions"; version="0.0.7"; sha256="1vg948xh0ndwkspbf5qb00b28fy9ygda55m5fq8bspq9d2y3c0pc"; depends=[]; }; Gmisc = derive { name="Gmisc"; version="1.1"; sha256="1dcnnsjxap50zfx984rxgksjcvqgbb9zxxd03186h4669slh1d0d"; depends=[abind forestplot Hmisc htmlTable knitr lattice magrittr Rcpp]; }; -GoFKernel = derive { name="GoFKernel"; version="2.0-5"; sha256="030gcj608nkalscjqs2ad73pwhk4gp5gl1lvm4mc9b39jhki0r70"; depends=[KernSmooth]; }; +GoFKernel = derive { name="GoFKernel"; version="2.0-6"; sha256="11x9xvgrb7si2y6s2cgxgk01j0laizjqddbqmmj37ylmnh0539mw"; depends=[KernSmooth]; }; GrammR = derive { name="GrammR"; version="1.0.1"; sha256="1dhq4srzxbdbym89dy4gh0c4jjfkljxdnriv4v0yh9g688my1gvn"; depends=[ape cluster GUniFrac gWidgets gWidgetsRGtk2 MASS rgl RGtk2]; }; GraphPCA = derive { name="GraphPCA"; version="1.0"; sha256="17ipcp7nh47lfs9jy1aybpz4r172zj5yyrdrgmd6wa7hax8yv8gg"; depends=[FactoMineR ggplot2 scales scatterplot3d]; }; GrapheR = derive { name="GrapheR"; version="1.9-84"; sha256="1wwks2a4vzhj1rcspizp1vadl6kvrqr8s4zd6pghj02nd266znk9"; depends=[]; }; @@ -849,7 +852,7 @@ HMR = derive { name="HMR"; version="0.4.1"; sha256="1acaph5q6vgi4c7liv7xsc3crhp2 HPbayes = derive { name="HPbayes"; version="0.1"; sha256="1kpqnv7ymf95sgb0ik7npc4qfkzc1zb483vwnjpba4f42jhf508y"; depends=[boot corpcor MASS mvtnorm numDeriv]; }; HSAUR = derive { name="HSAUR"; version="1.3-7"; sha256="16qmsyin8b7x9q3xdx74kw6db6zjinhxprp6pfnl6ddwxhz3jzzf"; depends=[]; }; HSAUR2 = derive { name="HSAUR2"; version="1.1-14"; sha256="0psykccxyqigkfzrszy7x3qhdw02kppzgz0bqr21q8zh51jb2y3v"; depends=[]; }; -HSAUR3 = derive { name="HSAUR3"; version="1.0-4"; sha256="1m2nqvm0ma5rmwwn27nzzyjzq8c0awsrrjjrnyaj50bcnmg0x0k6"; depends=[]; }; +HSAUR3 = derive { name="HSAUR3"; version="1.0-5"; sha256="0hjlkmxp1yhwkfcbx16nda96ysqddjrcvl4z52w2ab84prqn6196"; depends=[]; }; HSROC = derive { name="HSROC"; version="2.1.8"; sha256="056g6iygrddmpmg5nnilqrlw2xavmcc9q07z942vc2nivw06h346"; depends=[coda lattice MASS MCMCpack]; }; HSSVD = derive { name="HSSVD"; version="1.2"; sha256="1k7ga397grl0r4p0ipjgw5xlafb2528rpww67bw7mmy01w87a1cc"; depends=[bcv]; }; HTMLUtils = derive { name="HTMLUtils"; version="0.1.7"; sha256="05y505jazzahnd6jsp3plqz8hd75991hhhcpcdn8093rinb1f8l1"; depends=[R2HTML]; }; @@ -867,7 +870,7 @@ Haplin = derive { name="Haplin"; version="5.5"; sha256="12wkj5x1s920xs0xzhxk0dsw HaploSim = derive { name="HaploSim"; version="1.8.4"; sha256="0794f76hc9qvjmay7c61cmzycqafljs0g0hliq9xfrw4f23gq3sa"; depends=[]; }; HardyWeinberg = derive { name="HardyWeinberg"; version="1.5.5"; sha256="1kz12301bi2880i9ds7wvc6yb5hvrs3fr5689fm1yygkqfq8zc56"; depends=[mice]; }; HarmonicRegression = derive { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; }; -Harvest_Tree = derive { name="Harvest.Tree"; version="1.0"; sha256="0nqrplqkvch7vzlrp8pxpg4gs1qvsq33l5498yqn0bbpbs6xj120"; depends=[rpart]; }; +Harvest_Tree = derive { name="Harvest.Tree"; version="1.1"; sha256="021zmppy7p2iakaxirfjdb5jzakg1ijma9d25ly2ni0nx0p1mh6z"; depends=[rpart]; }; HelpersMG = derive { name="HelpersMG"; version="1.2"; sha256="1a9b7j53a8xfxc5dmm6m5f0ac2mir8yzkhg0fgah4gvbivaaz6nb"; depends=[coda]; }; HiClimR = derive { name="HiClimR"; version="1.2.2"; sha256="11qx0ych889vccgbh0ckx5hpmpmnbghi4h8lcawiqk8lzxhv03ld"; depends=[]; }; HiCseg = derive { name="HiCseg"; version="1.1"; sha256="19581k3g71wrznyqrp4hmspqyzcbcfbc48xgjlq13zmqii45hcn6"; depends=[]; }; @@ -880,6 +883,7 @@ HierO = derive { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2 HighDimOut = derive { name="HighDimOut"; version="1.0.0"; sha256="0r7mazwq4fsz547d3nyavmqya7144lg3fkl5f7amrp48l9h85vx2"; depends=[DMwR FNN foreach ggplot2 plyr proxy]; }; HistDAWass = derive { name="HistDAWass"; version="0.1.3"; sha256="09zg7yrw0zdgy7v6z9awysshks618jiqx01fasi8qb9wrdisvf74"; depends=[class FactoMineR ggplot2 histogram]; }; HistData = derive { name="HistData"; version="0.7-5"; sha256="17s64hfs7r77p0wjzpbgz9wp3gjzbly2d0v784f9m2bka8gj6xhr"; depends=[]; }; +HistogramTools = derive { name="HistogramTools"; version="0.3.2"; sha256="1wkv6ypn006d8j6bpbhc1knw0bky4y8r7jp87482yd19q5ljsgv0"; depends=[ash Hmisc stringr]; }; HiveR = derive { name="HiveR"; version="0.2.44"; sha256="1ckbgn4vmv35bssbjrgvqhsx7ihm40ibpnxqwwsw6bv7g6ppx3ch"; depends=[jpeg plyr png RColorBrewer]; }; Hmisc = derive { name="Hmisc"; version="3.16-0"; sha256="03d372bld4mikyrvmfw00ljiz6jf7szkmhrlgxs5vqk3v81kkp2f"; depends=[acepack cluster foreign Formula ggplot2 gridExtra gtable lattice latticeExtra nnet proto rpart scales survival]; }; Holidays = derive { name="Holidays"; version="1.0-6"; sha256="031vddjf7s3pirv041y2mw694db63gjajlbczmmya8b1zp2f3vzk"; depends=[TimeWarp]; }; @@ -919,6 +923,7 @@ INLABMA = derive { name="INLABMA"; version="0.1-6"; sha256="0rij3y89yyj25xz8r9n8 IPMpack = derive { name="IPMpack"; version="2.1"; sha256="08b79g5a9maxnxladvc2x2dgcmm427i8p6hhgda3mw2h5qmch2q3"; depends=[MASS Matrix nlme]; }; IPSUR = derive { name="IPSUR"; version="1.5"; sha256="0brh3dx7m1rilvr1ig6vbi7p13bfbblgvs8fc114f08d90fczwnq"; depends=[]; }; IQCC = derive { name="IQCC"; version="0.6"; sha256="0gsnkdl4cfxzq6pm9g4i1g23mxg108j3is4x69id1xn2plf92m04"; depends=[MASS micEcon miscTools qcc]; }; +IRISMustangMetrics = derive { name="IRISMustangMetrics"; version="1.0.0"; sha256="00s3jg1fsicqbmh52ajhacd7r11pnjpgv7qj2n4mdpxfvbndr1v3"; depends=[IRISSeismic pracma RCurl seismicRoll signal stringr XML]; }; IRISSeismic = derive { name="IRISSeismic"; version="1.0.5"; sha256="1mgb774bmy20c4dzisb7ij4xqz9jhajn384nb7sfcnz5khxznxc4"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; IRTShiny = derive { name="IRTShiny"; version="1.0"; sha256="1gjfqjqk7izl23b96g758dn6pb784ayb8yjjlryyrwga6mgsqdik"; depends=[beeswarm CTT ltm shiny shinyAce]; }; ISBF = derive { name="ISBF"; version="0.2.1"; sha256="12mk4d0m5rk4m5bskkkng5j6a9dzh8l1d74wh8lnamq7kf9ai9if"; depends=[]; }; @@ -937,6 +942,7 @@ InPosition = derive { name="InPosition"; version="0.12.7"; sha256="1f7xb2kxikmja IndependenceTests = derive { name="IndependenceTests"; version="0.2"; sha256="04qfh2mg9xkfnvp6k7w1ip4rb663p3pzww9lyprcjvr3hcac7gqa"; depends=[xtable]; }; InfDim = derive { name="InfDim"; version="1.0"; sha256="0rh3ch0m015xjkxy08vf9pc6q7azjc6sgicd2j6cwh611pqq39wq"; depends=[]; }; InferenceSMR = derive { name="InferenceSMR"; version="1.0"; sha256="13d3v8kyk6br33659jgql6j1nqmnd8zszqrwfw2x3khkiqzgdmhk"; depends=[survival]; }; +InformationValue = derive { name="InformationValue"; version="1.1.0"; sha256="0lnwvxjr1q30aqrcmcrwnliwix8195ax2p814zi13x2rbw59lqx2"; depends=[ggplot2]; }; IntLik = derive { name="IntLik"; version="1.0"; sha256="13ww5bsbf1vnpaip0w53rw99a8hxzziibj7j66cm31jmi8l6fznf"; depends=[maxLik]; }; InterVA4 = derive { name="InterVA4"; version="1.5"; sha256="0w2klq9dara941d4xz85qrq8dcp7vpc6rrz2k9ry01rsnpdzzybh"; depends=[]; }; Interact = derive { name="Interact"; version="1.1"; sha256="1g9zhafdpr7j410bi8p03d8x9f8m3n329x8v01yk15f65fp7pl1d"; depends=[]; }; @@ -950,7 +956,7 @@ IsingFit = derive { name="IsingFit"; version="0.3.0"; sha256="0imgj3g6sankzmycjk IsingSampler = derive { name="IsingSampler"; version="0.2"; sha256="16vwb5pcqjvvsk9wsgj10mzhgh72iz1q6n8nmkva6y1l7xv54c8w"; depends=[magrittr nnet plyr Rcpp]; }; Iso = derive { name="Iso"; version="0.0-17"; sha256="0lljc99sdzdqj6d56qbsggibr6pkdwkh821bj70ianikyvmdc1y0"; depends=[]; }; IsoCI = derive { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; }; -IsoGene = derive { name="IsoGene"; version="1.0-23"; sha256="18sl1qki2dn4ldycpqazj23zcibs3zqwp355q24nwr802xx3y4a6"; depends=[affy Biobase ff Iso xtable]; }; +IsoGene = derive { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; }; IsotopeR = derive { name="IsotopeR"; version="0.4.7"; sha256="18gwmh4nprj4z0ar1w8npj2ymxihw5ydwa33g25mimjk8y2cs0x5"; depends=[coda fgui runjags]; }; JADE = derive { name="JADE"; version="1.9-92"; sha256="0ki3jpz4npjikn3jjb7ppiyx0flhxx3p8aghjxlm3klhkm0k6ix4"; depends=[clue]; }; JAGUAR = derive { name="JAGUAR"; version="2.0"; sha256="1c9pyg9jph95161g6zz0jlv5hlyvr9z960by7x3pv7plfkppjy7m"; depends=[doParallel lme4 plyr Rcpp]; }; @@ -984,7 +990,7 @@ KappaV = derive { name="KappaV"; version="0.3"; sha256="13mmfb8ijpgvzfj20andqb66 Kendall = derive { name="Kendall"; version="2.2"; sha256="0z2yr3x2nvdm81w2imb61hxwcbmg14kfb2bxgh3wmkmv3wfjwkwn"; depends=[boot]; }; KernSmooth = derive { name="KernSmooth"; version="2.23-15"; sha256="1xhha8kw10jv8pv8b61hb5in9qiw3r2a9kdji3qlm991s4zd4wlb"; depends=[]; }; KernSmoothIRT = derive { name="KernSmoothIRT"; version="6.1"; sha256="1hq4sykddh9sg24qrnccii89nqxmq7hnldhn8wl6y62aj0h1nrqm"; depends=[plotrix Rcpp rgl]; }; -Kernelheaping = derive { name="Kernelheaping"; version="0.9"; sha256="0x42cv28c074zcb023plb3pw5ffrihwbl1jlwm2f4h68q84ra3a4"; depends=[evmix ks MASS plyr sparr]; }; +Kernelheaping = derive { name="Kernelheaping"; version="1.0"; sha256="0i255s5gwlcydxpn69kz7qyvzqbr3syppkzq1sq3sfn680i3hdyq"; depends=[evmix ks MASS plyr sparr]; }; Kmisc = derive { name="Kmisc"; version="0.5.0"; sha256="0pbj3gf0bxkzczl6k4vgnxdss2wmsffqvcf73zjwvzvr8ibi5d95"; depends=[data_table knitr lattice markdown Rcpp]; }; KoNLP = derive { name="KoNLP"; version="0.76.9"; sha256="1q72irl4izb7f5bb99plpqnmpfdq4x4ymp4wm2bsyfjcxm649ya8"; depends=[hash rJava Sejong stringr tau]; }; Kpart = derive { name="Kpart"; version="1.1"; sha256="1cyml48i1jvwy4xzymijwraqpnssnkrd81q3m7nyjd5m2czjvihv"; depends=[leaps]; }; @@ -1076,7 +1082,7 @@ MASSTIMATE = derive { name="MASSTIMATE"; version="1.2"; sha256="1j9l8b5d518ag9iv MAT = derive { name="MAT"; version="2.2"; sha256="093axw2zp4i3f6s9621zwibcxrracp77xrc0q5q0m4yv3m35x908"; depends=[Rcpp RcppArmadillo]; }; MATA = derive { name="MATA"; version="0.3"; sha256="006mnc4wqh9vdigfzrzx4csgczi0idvlwb6r23w5mmsfbn0ysdm5"; depends=[]; }; MATTOOLS = derive { name="MATTOOLS"; version="1.1"; sha256="1nzrkm3a08rpsd9vplyf33rrkadlrd0ln70k95qxj98ndh2v97px"; depends=[]; }; -MAVIS = derive { name="MAVIS"; version="1.1"; sha256="1nbvm6nfwymim63xvfqpvyk1w5fv6cwfh6cl2089myimid22ws1l"; depends=[compute_es ggplot2 MAc MAd metafor quantreg SCMA SCRT shiny shinyAce shinyBS]; }; +MAVIS = derive { name="MAVIS"; version="1.1.1"; sha256="1ydmnf4nn1d0iik3ldkk8d4291fvzhrgsjm0qkzd242r0mm2ss2p"; depends=[compute_es ggplot2 MAc MAd metafor quantreg SCMA SCRT shiny shinyAce shinyBS]; }; MAVTgsa = derive { name="MAVTgsa"; version="1.3"; sha256="0rzal9nsi8y873cbf6hrdyzyxnpd4r1yr9fj66cn0s1c8g93ls0y"; depends=[corpcor foreach MASS multcomp randomForest]; }; MAc = derive { name="MAc"; version="1.1"; sha256="1lshi5rb8l2mpd302wskhlk5vz1wjidvbss9y69l63zjqdwjs7ch"; depends=[]; }; MAclinical = derive { name="MAclinical"; version="1.0-5"; sha256="1g0ka1kqww2xim8rp5rznkzn0a541zvf841s3lbphfh9k3y3ixs3"; depends=[e1071 party plsgenomics st]; }; @@ -1152,6 +1158,7 @@ MRCV = derive { name="MRCV"; version="0.3-3"; sha256="0m29mpsd3kackwrawvahi22j0a MRH = derive { name="MRH"; version="2.0"; sha256="0d6zfhyy8a0pjrr74lj0mcagh49pjh15yp4wa7g7j4qv8wfw5pkv"; depends=[coda KMsurv survival]; }; MRIaggr = derive { name="MRIaggr"; version="1.1.2"; sha256="0z410xkfyaqfrdiwkw29z7l6n15hdwd4dwbjn211sj6s90fa4q2w"; depends=[Rcpp RcppArmadillo]; }; MRMR = derive { name="MRMR"; version="0.1.3"; sha256="1b3a4bkpcncl4sh7d81nk6b2dzhzqn9zhqdxv31jgippsqm2s3k2"; depends=[ggplot2 lmtest lubridate plyr reshape2]; }; +MRQoL = derive { name="MRQoL"; version="1.0"; sha256="0isn4g3jpz7wm99ymrshl6zgkb7iancdzdxl2w98n8fbxsh5z6sw"; depends=[]; }; MRSP = derive { name="MRSP"; version="0.4.3"; sha256="0zv22xiq3qh9x3r2ckkvq1vv0vkcirh8y87053bqvw1m20j7q1by"; depends=[Formula matrixcalc]; }; MRsurv = derive { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[mvtnorm survival]; }; MRwarping = derive { name="MRwarping"; version="1.0"; sha256="13bcs7rlm4irx7yzdnib558w9014a4chh9xwc010m6pxvxv36qnv"; depends=[boa SemiPar]; }; @@ -1201,7 +1208,7 @@ MetNorm = derive { name="MetNorm"; version="0.1"; sha256="0vfi3k0yp2dz47gwj1n1av MetSizeR = derive { name="MetSizeR"; version="1.1"; sha256="11hdmpvnszr6pn9ihb3zjy9miksz1fs4piry153z4dic8pjydkax"; depends=[cairoDevice gWidgets gWidgetsRGtk2 MetabolAnalyze mvtnorm]; }; MetStaT = derive { name="MetStaT"; version="1.0"; sha256="0400gx6i8xlkm51da98ap91c3hgrkgfgxswn0plaxfry3625khkp"; depends=[abind MASS pls]; }; MetaDE = derive { name="MetaDE"; version="1.0.5"; sha256="1ijg64bri5jn2d3d13q1gvvfyqmbh6gn0lk6dkihixf0jwvjdyqi"; depends=[Biobase combinat impute survival]; }; -MetaLandSim = derive { name="MetaLandSim"; version="0.3"; sha256="04pyl9p2mqf4sgsfbzc2l0hccnq6z9q1929lq24ip0g8pn2svj96"; depends=[Biobase e1071 fgui googleVis maptools raster rgeos sp spatstat spgrass6]; }; +MetaLandSim = derive { name="MetaLandSim"; version="0.4"; sha256="1r2yr3zmd1ldcaxnxqdd6z0vv1jnwv2ghchrsn463r0ibbpciw2a"; depends=[Biobase e1071 fgui googleVis maptools raster rgeos rgrass7 sp spatstat]; }; MetaPCA = derive { name="MetaPCA"; version="0.1.4"; sha256="14g4v3hyxnds4l2q36mpz282yqg8ahgdw3b0qmj0xg17krrf5l2s"; depends=[foreach]; }; MetaQC = derive { name="MetaQC"; version="0.1.13"; sha256="11595ggjr46z6xiwmhiyx1sydaq68l18y7mgdwxsg81g03ck9x1r"; depends=[foreach iterators proto]; }; MetaSKAT = derive { name="MetaSKAT"; version="0.40"; sha256="1jxs32hvsw6wzci9f1rc7sw1dfyazdm2d57wcmhkggfg3hkdn1vv"; depends=[SKAT]; }; @@ -1326,10 +1333,11 @@ OOmisc = derive { name="OOmisc"; version="1.2"; sha256="09vaxn5czsgn6wpr27lka40k OPDOE = derive { name="OPDOE"; version="1.0-9"; sha256="0pf8rv5wydc8pl4x57g7bk2swjabaxdgijgsigjy5wihfcb48654"; depends=[crossdes gmp mvtnorm nlme orthopolynom polynom]; }; OPI = derive { name="OPI"; version="2.1"; sha256="1pzw5b4gwf1q98547cgq7b363fn72ll0zlvcahy56wc1ci5ny3dd"; depends=[]; }; ORCI = derive { name="ORCI"; version="1.1"; sha256="0xy5lvz2scz06fphjyhqbdhp4bizmv87a8xykp9dbgx8b4ssnqgz"; depends=[BiasedUrn BlakerCI PropCIs]; }; -ORCME = derive { name="ORCME"; version="2.0.1"; sha256="0wr4z19alyp2cvlpg4bs8sni6nrwnhk11bbr00ycqym39alr2wjw"; depends=[Iso]; }; +ORCME = derive { name="ORCME"; version="2.0.2"; sha256="1pm8ajj24qqj2fir0gjzq5f4mfpl1cnj6fm2z5qg6g3sbnm57ayk"; depends=[Iso]; }; ORDER2PARENT = derive { name="ORDER2PARENT"; version="1.0"; sha256="04c80vk6z227w6qsnfls89ig4vqyiiymdarhq1pxa0gpr8j2ssx5"; depends=[Matrix]; }; ORIClust = derive { name="ORIClust"; version="1.0-1"; sha256="1biddddyls2zsg71w4innxl0ckfb80q2j9pmd56wvbc0qnbm0w3q"; depends=[]; }; ORMDR = derive { name="ORMDR"; version="1.3-2"; sha256="0y7b2aja3zvsd6lm7jal9pabcfxv16r2wh0kyzjkdfanvvgk3wmm"; depends=[]; }; +OTE = derive { name="OTE"; version="1.0"; sha256="18w483syhs523yfib9sibzmj16bypqxk4sc4771kfr1958h3igai"; depends=[randomForest]; }; OUwie = derive { name="OUwie"; version="1.45"; sha256="1g1315g015pcnd7g8k0vngjg7f842nq8ixhmqnj64by4vsafliva"; depends=[ape corpcor lattice nloptr numDeriv phangorn phytools]; }; Oarray = derive { name="Oarray"; version="1.4-5"; sha256="1w66vqxvqyrp2h6acnbg3xy7cp6j2dgvzmqqk564kvivbn40vyy4"; depends=[]; }; OasisR = derive { name="OasisR"; version="1.0.0"; sha256="0anw1ncbjjmlnhigcfwm9zqmp4ah5cfbmmm3588k95xxp6xq9vmv"; depends=[rgdal rgeos spdep]; }; @@ -1379,6 +1387,7 @@ PBSadmb = derive { name="PBSadmb"; version="0.68.104"; sha256="01akimdsp0bkvz3a5 PBSddesolve = derive { name="PBSddesolve"; version="1.11.29"; sha256="13vprr66hh5d19xambpyw7k7fvqxb8mj5s9ba19ls7xgypw22cmm"; depends=[]; }; PBSmapping = derive { name="PBSmapping"; version="2.69.76"; sha256="1fci7mx5m3jqy92nqfaw5w5yd5rw6f0bk5kya1v0mmvf7j715kar"; depends=[]; }; PBSmodelling = derive { name="PBSmodelling"; version="2.67.266"; sha256="0ych9k20x0m71gkdrpwv5jnx6pfsk45wwsaaamy32cmnhd3y14sq"; depends=[XML]; }; +PCA4TS = derive { name="PCA4TS"; version="0.1"; sha256="1qi9nlaf5181afrdvddh10a9vxyhry102n3dhai86im8yz4if9y6"; depends=[tseries]; }; PCAmixdata = derive { name="PCAmixdata"; version="2.2"; sha256="0gbmiy2mhz8lgp0pcjby4ny8a28wlx1xrsa2lknzxn4d0m2csxjn"; depends=[]; }; PCDSpline = derive { name="PCDSpline"; version="1.0"; sha256="15kmvcwvwlsr1107n7mfajvf9b1kcslnhsdx0drjjhsvq193qrqa"; depends=[matrixcalc nleqslv]; }; PCGSE = derive { name="PCGSE"; version="0.2"; sha256="19bpnn1b8ihmf52zh9g9pc38130np1ki8l7wf0j5myw2cnw6fna8"; depends=[MASS RMTstat safe]; }; @@ -1431,7 +1440,7 @@ PTAk = derive { name="PTAk"; version="1.2-12"; sha256="1phxh2qbzsj2ia2dr6z30lhi7 PTE = derive { name="PTE"; version="1.0"; sha256="10if2hh69yysi2y82m7is74hmzw2xpxijgb8bhy1d4g9n9lqidfs"; depends=[doParallel]; }; PVAClone = derive { name="PVAClone"; version="0.1-2"; sha256="0afl2il5wdcwzpyhjkgq8iz16q1086c3ndr4cjlyspgbss9h5l24"; depends=[dclone dcmle]; }; PVR = derive { name="PVR"; version="0.2.1"; sha256="1p87pj9g0qlc8ja6xdj2amny9pbkaqb34x2y9nkl1nj1pkwjq2s5"; depends=[ape splancs]; }; -Pade = derive { name="Pade"; version="0.1-3"; sha256="0jysdk55gnxa3x0j9v7r7qqqim0wfjph1v3amn08xf5wh5fd68yi"; depends=[]; }; +Pade = derive { name="Pade"; version="0.1-4"; sha256="1kx5qpxd3x43bmyhk8g2af44hz3prhnrzrm571kfjmak63kym741"; depends=[]; }; PairViz = derive { name="PairViz"; version="1.2.1"; sha256="0mjp5p6n5azbhrm2hvb9xyqjfhd49pw9ia8k70749yc96ws1qqc7"; depends=[graph gtools TSP]; }; PairedData = derive { name="PairedData"; version="1.0.1"; sha256="025h5wjsh9c78bg6gmg6p6kvv2s6d5x7fzn3mp42mlybq0ry78p0"; depends=[ggplot2 gld lattice MASS mvtnorm]; }; Paneldata = derive { name="Paneldata"; version="1.0"; sha256="00hk340x5d4mnpl3k0hy1nypgj55as2j7y2pgzfk3fpn3zls5zib"; depends=[]; }; @@ -1440,6 +1449,7 @@ ParallelForest = derive { name="ParallelForest"; version="1.1.0"; sha256="1xa9lf ParamHelpers = derive { name="ParamHelpers"; version="1.5"; sha256="1ywsc96gc252i6girr2ph674wfrzjfk96l2w8512rqy9bgimr0lr"; depends=[BBmisc checkmate]; }; ParentOffspring = derive { name="ParentOffspring"; version="1.0"; sha256="117g8h0k65f2cjffigl8n4x37y41rr2kz33qn2awyi876nd3mh93"; depends=[]; }; ParetoPosStable = derive { name="ParetoPosStable"; version="1.0.3"; sha256="0f3f4wn33vw1y3cjcvlk44g8z6hjkv4ws535pkcz3lgb95fl4q0n"; depends=[ADGofTest lmom]; }; +Pasha = derive { name="Pasha"; version="0.99.16"; sha256="1arzvii3rm4l94ivjccxvy9jgk8answy4r97l0zh7sznng8w1x6z"; depends=[Biostrings bitops GenomicAlignments GenomicRanges gtools IRanges Rsamtools S4Vectors ShortRead]; }; PatternClass = derive { name="PatternClass"; version="1.5"; sha256="1paw39xm2rqjnc7pnbya7gyl160kzl56nys9g0y1sa6cqycy3y5x"; depends=[SDMTools]; }; Peaks = derive { name="Peaks"; version="0.2"; sha256="0a173p5cdm1jnm7bwsvjpxh4dccy593g02c4qjwky1cgzy5rvin2"; depends=[]; }; PearsonDS = derive { name="PearsonDS"; version="0.97"; sha256="0bsdj4zir12zkv8yhq1z6dqjzhkb9l0f88jrr4iyclns1pcqvrvi"; depends=[]; }; @@ -1490,7 +1500,7 @@ PracTools = derive { name="PracTools"; version="0.2"; sha256="1njnm0rk2z9p3p8wsj PredictABEL = derive { name="PredictABEL"; version="1.2-2"; sha256="08c7j2in1wlas6nmy44s08cq86h5fizqbhsnq312dllqdzmb2h9s"; depends=[epitools Hmisc PBSmodelling ROCR]; }; PredictiveRegression = derive { name="PredictiveRegression"; version="0.1-4"; sha256="15vkisj3q4hinc3d537s8inhj3wk62q67qhy050xmp9j563ainmd"; depends=[]; }; PresenceAbsence = derive { name="PresenceAbsence"; version="1.1.9"; sha256="17qn4ggkr5aqml45nkihj1j35y479ywkm1xcfkb2g8ky66jb0c0s"; depends=[]; }; -PrevMap = derive { name="PrevMap"; version="1.1.5"; sha256="0bzk09ygz4i3v8s39p0n157wrylp38h5xz32f18py8gr776x311n"; depends=[geoR maxLik pdist raster splancs]; }; +PrevMap = derive { name="PrevMap"; version="1.2"; sha256="06036c5171lz8ys6sh2q58jq6frb9j5rgzd2v862prr6jg5643ci"; depends=[geoR maxLik pdist raster splancs truncnorm]; }; PrivateLR = derive { name="PrivateLR"; version="1.2-21"; sha256="1jwq8f0dnngj8sfbmcmxy34nkkq6yjw0mq3w1f8rasz67v3bwzp3"; depends=[]; }; ProDenICA = derive { name="ProDenICA"; version="1.0"; sha256="04gnsnd0xzw3bfbssdp06bar0lk305ry2c97pmwxgiz3ay88dfsj"; depends=[gam]; }; ProbForecastGOP = derive { name="ProbForecastGOP"; version="1.3.2"; sha256="0fnw3g19lx4vs8vmn4qdirvybkiy2cxkhwkn9qa3phz45iixnvx4"; depends=[fields RandomFields]; }; @@ -1549,7 +1559,7 @@ R2MLwiN = derive { name="R2MLwiN"; version="0.8-1"; sha256="0gkp5jvvbf9rppxirs1s R2OpenBUGS = derive { name="R2OpenBUGS"; version="3.2-3.1"; sha256="1nnyfhpqgx6wd4n039c4d42png80b2xcwalyj08bmq0cgl32cjgk"; depends=[boot coda]; }; R2STATS = derive { name="R2STATS"; version="0.68-38"; sha256="1v8mvkvs4fjch0dpjidr51jk6ynnw82zhhylyccyrad9f775j2if"; depends=[cairoDevice gWidgets gWidgetsRGtk2 lattice latticeExtra lme4 MASS Matrix proto RGtk2Extras statmod]; }; R2SWF = derive { name="R2SWF"; version="0.9"; sha256="0c3lkmm8wgpix3fv7dxql6zpklwbcsv1y30r26yws12fnavw4y1k"; depends=[sysfonts]; }; -R2WinBUGS = derive { name="R2WinBUGS"; version="2.1-20"; sha256="052frb3qlqfy6zl0qd2a9d4w2s7prfvdb0vn45rns68q03dma1ml"; depends=[boot coda]; }; +R2WinBUGS = derive { name="R2WinBUGS"; version="2.1-21"; sha256="0k8k214x712vjj2k1am4zzf6scccs3b98ysiz4lwxpzm818wp1ps"; depends=[boot coda]; }; R2admb = derive { name="R2admb"; version="0.7.13"; sha256="0sjli498pz1vk5wmw65mca08mramwhzlfli2aih15xj7qzvp0nky"; depends=[coda lattice]; }; R2jags = derive { name="R2jags"; version="0.5-6"; sha256="0zknl9qrypp96qz6rx7bkxg7bslvsnlhrgh749q4q566fz944n1g"; depends=[abind coda R2WinBUGS rjags]; }; R330 = derive { name="R330"; version="1.0"; sha256="01sprsg7kph62abhymm8zfqr9bd6dhihrfxzgr4pzi5wj3h80bjm"; depends=[lattice leaps rgl s20x]; }; @@ -1600,7 +1610,7 @@ REDCapR = derive { name="REDCapR"; version="0.7-1"; sha256="1r5vvl52z5gpqhq949fz REEMtree = derive { name="REEMtree"; version="0.90.3"; sha256="01sp36p12ky8vgsz6aik80w4abs70idr9sn4627lf94r92wwwsbc"; depends=[nlme rpart]; }; REPPlab = derive { name="REPPlab"; version="0.9.1"; sha256="1yrw03p7rk5dbr23z343kxn7vbac8khcz4c718wq9w6sykhgv8d0"; depends=[lattice rJava]; }; REQS = derive { name="REQS"; version="0.8-12"; sha256="049glqhc8h8gf425kmj92jv70917dsigpm37diby0c6hb4jrg8ka"; depends=[gtools]; }; -RESS = derive { name="RESS"; version="1.1"; sha256="1g4g15m29cb6c60ah86si6ibi8sb2j7spqml6lmcflk4rrnyi4pc"; depends=[]; }; +RESS = derive { name="RESS"; version="1.2"; sha256="13125b616z3ib2y9bkn770h4ix914gxgqi0yxqnr99qc99n7lavs"; depends=[]; }; REST = derive { name="REST"; version="1.0.1"; sha256="16v89z7p9qkg7bsypf9vkrnbmb2n7gw3fqnfzbyxwj496wzxdv1x"; depends=[Rcmdr]; }; REdaS = derive { name="REdaS"; version="0.9.2"; sha256="0w1b2996b0sdpxklkxylnk18dx8vgssn5avh7pnrvdqa464ci4f8"; depends=[]; }; RFGLS = derive { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; }; @@ -1637,7 +1647,7 @@ RJDBC = derive { name="RJDBC"; version="0.2-5"; sha256="0cdqil9g4w5mfpwq85pdq4vp RJSDMX = derive { name="RJSDMX"; version="1.4"; sha256="1g14nrjkspv3wyg9kc5bnn9zb37dw1z8y7mc4sxhacd1n2nxzb97"; depends=[rJava zoo]; }; RJSONIO = derive { name="RJSONIO"; version="1.3-0"; sha256="1dwgyiy19sixhy6yclqcaaxswbmpq7digyjjxhy1qv0wfsvk94qi"; depends=[]; }; RJaCGH = derive { name="RJaCGH"; version="2.0.4"; sha256="1a8nd0w73dvxpamzi2addwr6q3rxhnnpa1girnlwbd1j1dll0bz6"; depends=[]; }; -RJafroc = derive { name="RJafroc"; version="0.0.1"; sha256="0zjyr7qz50wvzkais6q9kyf3wp29g15kan73b8wdqrvab0f5rjqs"; depends=[ggplot2 stringr xlsx]; }; +RJafroc = derive { name="RJafroc"; version="0.1.0"; sha256="00nag4yak89pialch9p3r2ln6gs03jl5cx9rmipgvgyg031gf43f"; depends=[ggplot2 shiny stringr xlsx]; }; RKEA = derive { name="RKEA"; version="0.0-6"; sha256="1dncplg83b4zznh1zh90wr8jv5259cy93imrry86c5kqdijmhrrp"; depends=[rJava RKEAjars tm]; }; RKEAjars = derive { name="RKEAjars"; version="5.0-1"; sha256="00bva6ksdnmwa0i2zvr36n40xp429c0sqyp20a8n3zsblawiralc"; depends=[rJava]; }; RKlout = derive { name="RKlout"; version="1.0"; sha256="17mx099393b1m9dl3l5xjcpzmb9n3cpjghb90m9nidccxkhacmqf"; depends=[RCurl]; }; @@ -1678,12 +1688,12 @@ ROI_plugin_quadprog = derive { name="ROI.plugin.quadprog"; version="0.0-2"; sha2 ROI_plugin_symphony = derive { name="ROI.plugin.symphony"; version="0.0-2"; sha256="1z4cahz0h38jw54p9363ca6i3qq7dwlm3568dr91gvpqf76b05wd"; depends=[ROI Rsymphony slam]; }; ROMIplot = derive { name="ROMIplot"; version="1.0"; sha256="1njbsvnz7wrsv9l1p70p1ygmckaibz5i6jmvb0sfalp5jdcgl85n"; depends=[MortalitySmooth RCurl]; }; ROSE = derive { name="ROSE"; version="0.0-3"; sha256="12b9grh3rgaa07blbnxy8nvy5gvpd45m43bfqb3m4k3d0655jpk2"; depends=[]; }; -RObsDat = derive { name="RObsDat"; version="15.02"; sha256="1fagbmp48rnyln6jh2yzvc414q82q6dvixmia7yqg64lrkzkh302"; depends=[DBI e1071 sp spacetime vwr xts zoo]; }; +RObsDat = derive { name="RObsDat"; version="15.08"; sha256="0n64jqba682rdy696yfpi5l5sw6g33421hg1rnb1dwdnvr7yd0y9"; depends=[DBI e1071 sp spacetime vwr xts zoo]; }; ROptEst = derive { name="ROptEst"; version="0.9"; sha256="0m5czyqcsz42dzrhm3vwfmn046n57cb7x5sqzf2nad1gqgxzxp1d"; depends=[distr distrEx distrMod RandVar RobAStBase]; }; ROptEstOld = derive { name="ROptEstOld"; version="0.9.2"; sha256="0blf34xff9pjfy983xm7a27xqkh9173nk64ysas6f0g4h31gh8ax"; depends=[distr distrEx evd RandVar]; }; ROptRegTS = derive { name="ROptRegTS"; version="0.9.1"; sha256="1a8pbn63wh2w2n409yzbwvarvhphcn82rdqjh407ch3k3x6jz3r5"; depends=[distr distrEx RandVar ROptEstOld]; }; ROptimizely = derive { name="ROptimizely"; version="0.2.0"; sha256="059zfn6y687h989wryvpqwgnp9njrrr4ys0gf1ql4pw85b2c50dy"; depends=[httr jsonlite]; }; -ROracle = derive { name="ROracle"; version="1.1-12"; sha256="1ydmckr0wzjgvhhh410l4ih7idbr8140g6v11avh655wffk02q5p"; depends=[DBI]; }; +ROracle = derive { name="ROracle"; version="1.2-1"; sha256="19avgm4sxv052alh938bcvc7z8xx70vdwd9pilaidxydbar5kqz1"; depends=[DBI]; }; RPANDA = derive { name="RPANDA"; version="1.0"; sha256="1q8chhmdgn697a4qp4f7prdviar29z0py050748qw7ab326lqp5d"; depends=[ape deSolve picante pspline]; }; RPCLR = derive { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; }; RPEnsemble = derive { name="RPEnsemble"; version="0.2"; sha256="1kbgpbk7gma0vhl0aybdj7bk2chhbggzh7h1w7snddgdvvj6cz10"; depends=[class MASS]; }; @@ -1775,7 +1785,7 @@ Rcgmin = derive { name="Rcgmin"; version="2013-2.21"; sha256="02igq7bdlxwa7ysfiy Rchoice = derive { name="Rchoice"; version="0.3"; sha256="1ac2nw03g66z2rgxzv8jqad74cp4c9ry0hvnw77d57ddaxszkrva"; depends=[Formula maxLik msm plm plotrix]; }; Rclusterpp = derive { name="Rclusterpp"; version="0.2.3"; sha256="02s5gmmmd0l98wd1y884pjl3h289dyd9p9s7dh7yl2zaslqs2094"; depends=[Rcpp RcppEigen]; }; Rcmdr = derive { name="Rcmdr"; version="2.1-7"; sha256="1qn0bfh36shdnm2qbjwggjv19vqkkhng82x39sdbljx0z3g3bmdg"; depends=[abind car RcmdrMisc tcltk2]; }; -RcmdrMisc = derive { name="RcmdrMisc"; version="1.0-2"; sha256="18by1b1iz7q6lbnhxj5l5w58fqsvki84d830sv7iyzrs2q6n7vhq"; depends=[abind car e1071 Hmisc MASS sandwich]; }; +RcmdrMisc = derive { name="RcmdrMisc"; version="1.0-3"; sha256="134yr2n0m61bw8rv1iar2l9dk9a178k2pxba0bsxrd1c9j3s1f0j"; depends=[abind car colorspace e1071 Hmisc MASS readxl sandwich]; }; RcmdrPlugin_BCA = derive { name="RcmdrPlugin.BCA"; version="0.9-8"; sha256="0xkip7q9i57ghgz0rh0pl8nkl7bflf4w1g4zbyjdlcjypyf7lnr8"; depends=[BCA car flexclust foreign nnet Rcmdr RcmdrMisc rpart rpart_plot]; }; RcmdrPlugin_DoE = derive { name="RcmdrPlugin.DoE"; version="0.12-3"; sha256="1iifn71kjjgcp7dfz2pjq57mgbv4rrznrl3b3k9gdc2dva1z9zvc"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc relimp]; }; RcmdrPlugin_EACSPIR = derive { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; }; @@ -1819,7 +1829,7 @@ Rcpp = derive { name="Rcpp"; version="0.12.0"; sha256="182109z0yc1snqgd833ssl2ci Rcpp11 = derive { name="Rcpp11"; version="3.1.2.0"; sha256="1x6n1z7kizagr5ymvbwqb7nyn3lca4d4m0ks33zhcn9gay6g0fac"; depends=[]; }; RcppAPT = derive { name="RcppAPT"; version="0.0.1"; sha256="0fyya80bd3w22qbsbznj9y21dwlj30a16d8a8kww4x8bpvmyil5z"; depends=[Rcpp]; }; RcppAnnoy = derive { name="RcppAnnoy"; version="0.0.6"; sha256="1n4wrllhxn95lgkralvw5jjgff93nay5wdlyihih7f195fq5wqms"; depends=[Rcpp]; }; -RcppArmadillo = derive { name="RcppArmadillo"; version="0.5.200.1.0"; sha256="0vz0yl5k0q57xrnjpz1bxs6j3hpysp1mkcxf5fs6xdy6nzaqsr7x"; depends=[Rcpp]; }; +RcppArmadillo = derive { name="RcppArmadillo"; version="0.5.300.4"; sha256="0d6lda82lh896k7rf9s7alzqklmkrr0jwk8zxf6zqli7g1qmrywb"; depends=[Rcpp]; }; RcppBDT = derive { name="RcppBDT"; version="0.2.3"; sha256="0gnj4gz754l80df7w3d5qn7a57z9kq494n00wp6f7vr8aqgq8wi1"; depends=[BH Rcpp]; }; RcppCNPy = derive { name="RcppCNPy"; version="0.2.4"; sha256="1cawaxghbliy7hgvqz3y69asl43bl9mxf46nwpbxc0vx3cq15fnk"; depends=[Rcpp]; }; RcppClassic = derive { name="RcppClassic"; version="0.9.6"; sha256="1xhjama6f1iy7nagnx1y1pkqffrq8iyplllcar24vxr0zirgi1xi"; depends=[Rcpp]; }; @@ -1865,14 +1875,14 @@ RenextGUI = derive { name="RenextGUI"; version="1.3-0"; sha256="0ydq57k5va1l10dx Reol = derive { name="Reol"; version="1.55"; sha256="0147x3fvafc47zd2chgv3b40k480pcjpji8vm1d741i1p6ml448p"; depends=[ape RCurl XML]; }; ReorderCluster = derive { name="ReorderCluster"; version="1.0"; sha256="0ss750frzvj0bm1w7zblmcsjpszhnbffwlkaw31sm003lbx9hy58"; depends=[gplots Rcpp]; }; RepeatedHighDim = derive { name="RepeatedHighDim"; version="2.0.0"; sha256="1n9w4jb25pm0mmsahlfhkp9jmhgp5b21l1g85gm2wbxqkjsg7g0g"; depends=[MASS nlme]; }; -ReporteRs = derive { name="ReporteRs"; version="0.7.8"; sha256="1gzsdrkmz2g59m2653xfcl4d6zs010hzcjxr6sk26dhxj11alqgr"; depends=[ReporteRsjars rJava]; }; +ReporteRs = derive { name="ReporteRs"; version="0.8.2"; sha256="1widvbfwqvzcjyk746ybz921yifnn1q3ybi3ijy31mixqgm9m9ka"; depends=[ReporteRsjars rJava]; }; ReporteRsjars = derive { name="ReporteRsjars"; version="0.0.2"; sha256="1abvgzxipg0cgiy26z14i99qydzqva6j2v7pnrxapysg7ml5cnjc"; depends=[rJava]; }; ResistorArray = derive { name="ResistorArray"; version="1.0-28"; sha256="055zr4rybgrvg3wsgd9vhyjpvzdskrlss68r0g7rnj4yxkix0kxz"; depends=[]; }; ResourceSelection = derive { name="ResourceSelection"; version="0.2-4"; sha256="01r1w03paazyix5jjxww89falba1qfiqcznx79a6fmsiv8gm2x5w"; depends=[]; }; RevEcoR = derive { name="RevEcoR"; version="0.99.2"; sha256="100sman51vvwg5xkypmksyyjqdb6g858z29vn7x4kvly8ncw4hfd"; depends=[gtools igraph magrittr Matrix plyr stringr XML]; }; Rfacebook = derive { name="Rfacebook"; version="0.5"; sha256="0cl4s815i4yxp805j8nhqmva31imbd1xp3yxgi53qwjhagh4i57a"; depends=[httpuv httr rjson]; }; Rfit = derive { name="Rfit"; version="0.21"; sha256="129z5ivwfxbh3rfwk98jnm6ibq5z9z3r9mhy9gv61jfr4ig78dcn"; depends=[quantreg]; }; -Rgbp = derive { name="Rgbp"; version="1.0.9"; sha256="0a0krpj73psf8cahjxd7xzslckzs6325phc2kr1vd2ik56vcyqlz"; depends=[mnormt sn]; }; +Rgbp = derive { name="Rgbp"; version="1.1.0"; sha256="1bz5w8xd9vldlsr23dsbp1s70xwsikl253awv8bk26hck76mk85s"; depends=[mnormt sn]; }; Rglpk = derive { name="Rglpk"; version="0.6-1"; sha256="011l60571zs6h8wmv4r834dg24knyjxhnmxc7yrld3y2qrhcl714"; depends=[slam]; }; Rgnuplot = derive { name="Rgnuplot"; version="1.0.3"; sha256="0mwpq6ibfv014fgdfsh3wf8yy82nzva6cgb3zifn3k9lnr3h2fj7"; depends=[]; }; RgoogleMaps = derive { name="RgoogleMaps"; version="1.2.0.7"; sha256="04k7h8hgxvgsccdiysbblplwjvn8m7g8h3anzdlxmmjaamd8l9lw"; depends=[png RJSONIO]; }; @@ -2070,7 +2080,7 @@ Sejong = derive { name="Sejong"; version="0.01"; sha256="1d9gw42dbs74w7xi8r9bs6d SeleMix = derive { name="SeleMix"; version="0.9.1"; sha256="04gxgja35qs4k66iil014dzgl5bkx0qhr9w4v7qpmwv2bb07jwz3"; depends=[Ecdat mvtnorm xtable]; }; SelvarMix = derive { name="SelvarMix"; version="1.0"; sha256="0yysmf854xz5l0lf2x0hw0qxbrdhgfrcx5ggw8n4pjfv553p38ni"; depends=[glasso Rcpp RcppArmadillo Rmixmod]; }; SemiCompRisks = derive { name="SemiCompRisks"; version="2.0"; sha256="0in3pv66nhb0ar4xfxskvf24c7bqkr9ik069a4nynwnc3idpsq32"; depends=[]; }; -SemiMarkov = derive { name="SemiMarkov"; version="1.4.1"; sha256="048hmbcmhqkvqw8nbzm0136mc9w7b27jy8q9r3rvc3banh854d1m"; depends=[MASS numDeriv Rsolnp]; }; +SemiMarkov = derive { name="SemiMarkov"; version="1.4.2"; sha256="0xfa3arn98pfnhbcq3p880v177dhczcjm5bc1m84kygbhiaifsjg"; depends=[MASS numDeriv Rsolnp]; }; SemiPar = derive { name="SemiPar"; version="1.0-4.1"; sha256="05gnk4s0d6276rmnyyv6gy1wpkji3sw563n8l7hmi9qqa19ij22w"; depends=[cluster MASS nlme]; }; SemiParBIVProbit = derive { name="SemiParBIVProbit"; version="3.5"; sha256="1m063bv9fqsnmi6aw2w6dx2s2qgh9ci1v9bcvh83zb3j2ajprkrk"; depends=[magic mgcv survey trust VGAM VineCopula]; }; SemiParSampleSel = derive { name="SemiParSampleSel"; version="1.2"; sha256="1k9xmby8hy4k0qn7pjj0rypxj4iqb206ixv92bz7ga0q8zd0nxbr"; depends=[copula gamlss_dist magic Matrix mgcv mvtnorm trust VGAM]; }; @@ -2206,7 +2216,7 @@ TIMP = derive { name="TIMP"; version="1.12.1"; sha256="06zjpa9j4sr62f2lspa75i7n8 TInPosition = derive { name="TInPosition"; version="0.13.6"; sha256="1cxxrfpbiyknaivv6gyp79lz0rxwhrndcd054smksxq8zcfz0v7c"; depends=[ExPosition InPosition prettyGraphs TExPosition]; }; TKF = derive { name="TKF"; version="0.0.8"; sha256="1db87lwx26ayv1x2k8qd9dfr6j3jkvdl9ykisaxr42l6akqy21nr"; depends=[ape expm numDeriv phangorn phytools]; }; TMDb = derive { name="TMDb"; version="1.0"; sha256="0bbcmsv7b3vvskhdjww03gbcgql44vsvyjz2fajy9w2vgkr6ga90"; depends=[httr jsonlite]; }; -TOC = derive { name="TOC"; version="0.0-2"; sha256="0zkwbjyi5dc6y0fzmwkbyrf32h0r5vhxxz67zjrhqc06vyasai8w"; depends=[bit raster rgdal]; }; +TOC = derive { name="TOC"; version="0.0-3"; sha256="0zgggkxsn7mqa5bh9rpb29ag019bwpy4yf3nd3nrcz5yk22bh7bn"; depends=[bit raster rgdal]; }; TPmsm = derive { name="TPmsm"; version="1.2.0"; sha256="1670b9g6sqlg5xk76x77cph1wzp44yp957sn8px5k7kkb1hgi0pl"; depends=[KernSmooth]; }; TR8 = derive { name="TR8"; version="0.9.13"; sha256="07wrqwa5gf1l1y3b07mganr5xkzxdzrh6lrv7gf01m9b7bsz564m"; depends=[gdata gWidgets gWidgetstcltk plyr rappdirs RCurl taxize XML]; }; TRAMPR = derive { name="TRAMPR"; version="1.0-7"; sha256="135ylhijhpdxpznfdbdzwfsvy8bhw1yx28c3520a3lyrqvinpawg"; depends=[]; }; @@ -2264,6 +2274,7 @@ TimeProjection = derive { name="TimeProjection"; version="0.2.0"; sha256="04yr4c TimeWarp = derive { name="TimeWarp"; version="1.0.12"; sha256="1qadaf8n8ym5nv1z328hd5wiw78f014imgd2ryvi70sh4dmzb16l"; depends=[]; }; Tinflex = derive { name="Tinflex"; version="1.1"; sha256="1wnb893x4gj1h3fpyblks07dln5ilpllpmmwp7wpqbvj7hzrj661"; depends=[]; }; TipDatingBeast = derive { name="TipDatingBeast"; version="0.1-6"; sha256="0yfm99j2b3k9har87qb675jxgfp5vq3aizqvxc1njnfyh5yjg89k"; depends=[mclust]; }; +Tmisc = derive { name="Tmisc"; version="0.1.1"; sha256="14yz8j0dzpxhn7w7zviy3habq78dn4z1absz664vhdrkcql4f3fx"; depends=[dplyr]; }; TopKLists = derive { name="TopKLists"; version="1.0.3"; sha256="0687nxsddmlgyz3kwcfmcv0vj2pw91154rd1p19ivhmbvhvnhwvh"; depends=[gplots Hmisc]; }; TraMineR = derive { name="TraMineR"; version="1.8-10"; sha256="05x23argga7xh7ggv08b659j9ljnygbfwfh3pqiadhw9dipgyqqp"; depends=[boot RColorBrewer]; }; TraMineRextras = derive { name="TraMineRextras"; version="0.2.4"; sha256="144s25ivq27f81dgh9x9h1fph1hdk86w9yac1hy6358kc8jnmi3q"; depends=[cluster combinat RColorBrewer survival TraMineR]; }; @@ -2330,7 +2341,7 @@ VineCopula = derive { name="VineCopula"; version="1.6"; sha256="16hzjdllpk2dsc66 VizOR = derive { name="VizOR"; version="0.7-9"; sha256="1xw06y86nsrwpri6asrwh8kccjsqzzidgbpld6d6l7vrglp8m6sr"; depends=[lattice rms]; }; Voss = derive { name="Voss"; version="0.1-4"; sha256="056izh1j26vqjhjh01fr7nwiz1l6vwr5z4fll87w99nc5wc4a467"; depends=[fields]; }; VoxR = derive { name="VoxR"; version="0.5.1"; sha256="07lsp6lrkq0gv55m84dl9w7gz5246d9avypqnkz96n3rbbgd0w5z"; depends=[]; }; -W2CWM2C = derive { name="W2CWM2C"; version="1.0"; sha256="14q1y4vpmrx8qz5nav8bbjkxqsqk646zcwr8h7yzi7cfa85b4cxz"; depends=[wavemulcor waveslim]; }; +W2CWM2C = derive { name="W2CWM2C"; version="2.0"; sha256="139rbbhshiap3iq4s4n84sip3cwwjn2x7lm7kmzwj5glhl5dc6ga"; depends=[colorspace wavemulcor waveslim]; }; W3CMarkupValidator = derive { name="W3CMarkupValidator"; version="0.1-4"; sha256="08697va5n59d7yyv882ya3s2qw94n7c53d8wyavpvhqq9d3n8nwi"; depends=[RCurl XML]; }; WARN = derive { name="WARN"; version="1.1"; sha256="0rnzsc8vbm116g4cwdivmxqv1zyg4givjrrlahvbf4xl5pbryg6d"; depends=[MASS]; }; WCE = derive { name="WCE"; version="1.0"; sha256="1kb1z67ymnz8cgwxq6m5fpqgxmmrfiwh2q3x4rhanac2sinagyn4"; depends=[plyr survival]; }; @@ -2374,7 +2385,7 @@ YaleToolkit = derive { name="YaleToolkit"; version="4.2.2"; sha256="12wggdyz0wgn YieldCurve = derive { name="YieldCurve"; version="4.1"; sha256="0w47j8v2lvarrclnixwzaq98nv1xh2m48q5xvnmk7j9nsv2l3p68"; depends=[xts]; }; YourCast = derive { name="YourCast"; version="1.6.2"; sha256="0vl37svwky6j1am235ac2wk1fdmh509w0h4m7y93lpjhzj6m8c1p"; depends=[foreign ggplot2 gridExtra lattice reshape2]; }; YplantQMC = derive { name="YplantQMC"; version="0.6-4"; sha256="09galr2bcjvfpcp84znsv45j2cfyn4yhdx31kxs062sylys6kxld"; depends=[geometry gplots LeafAngle rgl]; }; -YuGene = derive { name="YuGene"; version="1.1.2"; sha256="0sy0bh49l0fajh1z88mpb4f0k3hsf3kd1vxv731qhpxcrc3pz09b"; depends=[mixOmics]; }; +YuGene = derive { name="YuGene"; version="1.1.4"; sha256="0qvws7jccq7cg4r3lr7c19q56rh3gy2jx7bba4mfjy2ywl24q62n"; depends=[mixOmics]; }; ZIM = derive { name="ZIM"; version="1.0.2"; sha256="1n4dc0as011gzaac153zq1dfbg1axvmf9znlmhl7xjj4dz4966qm"; depends=[MASS]; }; ZeBook = derive { name="ZeBook"; version="0.5"; sha256="1djwda6hzx6kpf4dbmw0fkfq39fqh80aa3q9c6p41qxzcpim27dw"; depends=[deSolve triangle]; }; Zelig = derive { name="Zelig"; version="4.2-1"; sha256="1hhr9jx25fdnkqwyj2bkgrvqlah4z2drphmb5mdn1an2p2g23v9z"; depends=[boot MASS sandwich]; }; @@ -2385,7 +2396,7 @@ aCRM = derive { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0 aLFQ = derive { name="aLFQ"; version="1.3.2"; sha256="1963np2b2x7gbpgwcx0rqxd2psfdfmh72ap1y4p7f37ibjm8g45m"; depends=[caret data_table lattice plyr protiq randomForest reshape2 ROCR seqinr]; }; aRpsDCA = derive { name="aRpsDCA"; version="1.0.1"; sha256="1hxf3lpdcx8h9gndclppsxr8rs048mi3nysjj1z3fgbpmkqnlxgs"; depends=[]; }; aRxiv = derive { name="aRxiv"; version="0.5.10"; sha256="1q8nblb0kfdidcj1nwxn0fap87wpkg49z0bgmwayskwv1p860wrh"; depends=[httr XML]; }; -aSPU = derive { name="aSPU"; version="1.36"; sha256="13mvkwqdhhs6wc64dwlw1114nfb9m3iggqbdilhc4w1vljdjxaa5"; depends=[]; }; +aSPU = derive { name="aSPU"; version="1.37"; sha256="01593vykj5hiw3nhl7kxylb52qvndpmpiwsb0igh0ci20ng45ci4"; depends=[]; }; aTSA = derive { name="aTSA"; version="3.1.2"; sha256="1p3spas0sxj08hkb8p6k2fy64w86prlw1hbnrqnrklr0hnkg2g54"; depends=[]; }; abbyyR = derive { name="abbyyR"; version="0.1"; sha256="03krflrjhq7yx06wacfyxzqvq0v2b17xvcyl8sfnaylrilracwjq"; depends=[httr XML]; }; abc = derive { name="abc"; version="2.1"; sha256="0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb"; depends=[abc_data locfit MASS nnet quantreg]; }; @@ -2590,7 +2601,7 @@ basicspace = derive { name="basicspace"; version="0.15"; sha256="11aqrai26kdwszz batade = derive { name="batade"; version="0.1"; sha256="1lr0j20iydh15l6gbn471vzbwh29n58dlpv9bcx1mnsqqnsgpmal"; depends=[hwriter]; }; batch = derive { name="batch"; version="1.1-4"; sha256="03v8a1hsjs6nfgmhdsv6fhy3af2vahc67wsk71wrvdxwslmn669q"; depends=[]; }; batchmeans = derive { name="batchmeans"; version="1.0-2"; sha256="126q7gyb1namhb56pi0rv9hchlghjr95pflmmpwhblqfq27djss2"; depends=[]; }; -bayesDccGarch = derive { name="bayesDccGarch"; version="1.1"; sha256="1gjba5c9vfgvhlard6k47rc2f4r497qy4ybjwr57rm3n3jb0vkl1"; depends=[coda numDeriv]; }; +bayesDccGarch = derive { name="bayesDccGarch"; version="1.2"; sha256="15skkm4vmqj1r0vic1wgr58x8c7p6igvlmafbv0c46yl224qgryv"; depends=[coda numDeriv]; }; bayesDem = derive { name="bayesDem"; version="2.4-1"; sha256="0s2dhy8c90smvaxcng6ixhjm7kvwwz2c4lgplynrggrm8rfb19ay"; depends=[bayesLife bayesPop bayesTFR gWidgets gWidgetsRGtk2 RGtk2 wpp2012]; }; bayesGARCH = derive { name="bayesGARCH"; version="2.0.1"; sha256="1gz18wjikkg3yf71b1g21cx918dyz89f5m295iv8ah807cdx7vjk"; depends=[coda mvtnorm]; }; bayesGDS = derive { name="bayesGDS"; version="0.6.1"; sha256="0134x5knwp9pmkjyzgi1k7hjj92sym1p0zq98sizlbs0mff2p2s4"; depends=[Matrix]; }; @@ -2618,7 +2629,7 @@ bcpmeta = derive { name="bcpmeta"; version="1.0"; sha256="02fw1qz9cvr7pvmcng7qg7 bcrm = derive { name="bcrm"; version="0.4.4"; sha256="0gcigc7505fsk1m70df3n0dz553adkbs8yz2bhskb4qrw4gbmvr7"; depends=[ggplot2 mvtnorm]; }; bcrypt = derive { name="bcrypt"; version="0.2"; sha256="0f4sw1w2k1237wipfva3k9w2a678pvfz0k86jd7djslhyimb6jrq"; depends=[openssl]; }; bcv = derive { name="bcv"; version="1.0.1"; sha256="0yqcfariw9sw0b8cpljcr7vf5rf0cwr1wbif23icchfaxk2m42gj"; depends=[]; }; -bda = derive { name="bda"; version="5.1.3"; sha256="0v2xki9a1j6y42x03a3rrm746xx4qd3ris1m0k7alh25j3ayhs3p"; depends=[]; }; +bda = derive { name="bda"; version="5.1.6"; sha256="0rpxvmjbqiph8hpzsvlj8q6h70jsc9771fiq7l3lmkz69jn1gf4q"; depends=[]; }; bde = derive { name="bde"; version="1.0.1"; sha256="1f25gmjfl58x4pns89abfk85yq5aad3bgq9yqpv505g5gxk62d3v"; depends=[ggplot2 shiny]; }; bdpv = derive { name="bdpv"; version="1.1"; sha256="0i6wdf27243ch8pn2chqriwxjg3g72wbvzlx52mz4ahw700xjc7n"; depends=[]; }; bdscale = derive { name="bdscale"; version="1.2"; sha256="0j2h7ainfnh78szp355didbkmcl6d5vz1di8nznjarwxncrbgc6g"; depends=[ggplot2 scales]; }; @@ -2690,7 +2701,7 @@ binseqtest = derive { name="binseqtest"; version="1.0.1"; sha256="0snlrwmmmwrl3f bio_infer = derive { name="bio.infer"; version="1.3-3"; sha256="14pdv6yk0sk6v8g9p6bazbp7mr3wmxgfi6p6dj9n77lhqlvjcgm9"; depends=[]; }; bio3d = derive { name="bio3d"; version="2.2-2"; sha256="0sqwl27n15sbablw4mcqgf0w2k28jc59wf8yqxrmqbg8cckfsh9j"; depends=[]; }; bioPN = derive { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; -biogas = derive { name="biogas"; version="1.0.1"; sha256="0fjxfj4c4clyp4gkzm0dl5ls7pbyaxmff56dw59wswijm4na2il7"; depends=[]; }; +biogas = derive { name="biogas"; version="1.1.0"; sha256="0cbz4vy6iah4qbxlk4dmvpvyj4by7mkmzac1xi5j14w8xjlw5h0y"; depends=[]; }; biogram = derive { name="biogram"; version="1.2"; sha256="1kklidp1nm9jb0nvlhlhxklh4fp86plfsslp4ajnv8i4rc6h0v19"; depends=[bit entropy slam]; }; biom = derive { name="biom"; version="0.3.12"; sha256="18fmzp2zqjk7wm39yjlln7mpw5vw01m5kmivjb26sd6725w7zlaa"; depends=[Matrix plyr RJSONIO]; }; biomartr = derive { name="biomartr"; version="0.0.1"; sha256="10bi0vz9y2s7v41rkxifgf23w67ladpmmhhpfvnhbjqwwdk97snc"; depends=[biomaRt Biostrings data_table downloader dplyr httr RCurl stringr XML]; }; @@ -2698,7 +2709,7 @@ biomod2 = derive { name="biomod2"; version="3.1-64"; sha256="0ymqscsdp5plhnzyl25 bionetdata = derive { name="bionetdata"; version="1.0.1"; sha256="1l362zxgcvxln47b1vc46ad6ww8ibwhqr2myxnz1dnk2a8nj7r2q"; depends=[]; }; biorxivr = derive { name="biorxivr"; version="0.1.1"; sha256="0v2jmqpdcci3wwpcrakqcssahy3yx07s265axs14615w74dgd4kl"; depends=[XML]; }; bios2mds = derive { name="bios2mds"; version="1.2.2"; sha256="1avzkbk91b7ifjba5zby5r2yw5mibf2wv05a4nj27gwxfwrr21cd"; depends=[amap cluster e1071 rgl scales]; }; -biosignalEMG = derive { name="biosignalEMG"; version="1.0.3"; sha256="0nbr0d2hf28csv3lhl4af7hhqivwxaa1c1aj2yy1xjvnn6fd8mr3"; depends=[]; }; +biosignalEMG = derive { name="biosignalEMG"; version="2.0.0"; sha256="0avn35r567crp3z4i1fvlfirvc085cf3g6znc6wgnm7mhxp3l1ss"; depends=[signal]; }; biotools = derive { name="biotools"; version="2.1"; sha256="15ncx700v5ignr3gggz5zfspskzpj3kpzsy6rg2y4pnjm1vlndgj"; depends=[boot MASS rpanel tkrplot]; }; bipartite = derive { name="bipartite"; version="2.05"; sha256="05w3ypdxy2lfygdlvg9xv88dpsf21i60rsbvvz058zwpfzr39hfh"; depends=[fields igraph MASS permute sna vegan]; }; biplotbootGUI = derive { name="biplotbootGUI"; version="1.1"; sha256="0k92z9iavvq5v56x2hgkmrf339xl7ns1pvpqb4ban8r1j8glzawi"; depends=[cluster dendroextras MASS rgl shapes tcltk2 tkrplot]; }; @@ -2734,9 +2745,11 @@ bmk = derive { name="bmk"; version="1.0"; sha256="1wxkrlrhmsxsiraj8nyiax9bqs834l bmmix = derive { name="bmmix"; version="0.1-2"; sha256="00php2pgpnm9n0mnamchi6a3dgaa97kdz2ynivrf38s0vca7fqx8"; depends=[ggplot2 reshape2]; }; bmp = derive { name="bmp"; version="0.2"; sha256="059ps1sy02b22xs138ba99fkxq92vzgfbyf2z5pyxwzszahgy869"; depends=[]; }; bmrm = derive { name="bmrm"; version="3.0"; sha256="0ix5hfsvs2vnca0l1aflynddw6z85cqdyxn0y7xynkkapk182g4p"; depends=[LowRankQP lpSolve]; }; +bnclassify = derive { name="bnclassify"; version="0.3.0"; sha256="0fqib9gq0rpwy5bs11dn251s6yld1scrg0lib034dzbkkblvik1m"; depends=[assertthat crossval entropy graph matrixStats RBGL rpart]; }; bnlearn = derive { name="bnlearn"; version="3.8.1"; sha256="07lh67nw7wpjimim44zpw8h1rq4yqa2sdjcwj95bmyc25hlzv1s1"; depends=[]; }; bnormnlr = derive { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; }; bnpmr = derive { name="bnpmr"; version="1.1"; sha256="0hvwkdbs2p2l0iw0425nca614qy3gsqfq4mifipy98yxxvgh8qgc"; depends=[]; }; +bnstruct = derive { name="bnstruct"; version="1.0"; sha256="1bc4q5gk56xmmsiglg8434hpl3lvbyg9hgv5xx5b8law6hn5znz4"; depends=[bitops igraph Matrix]; }; boa = derive { name="boa"; version="1.1.8-1"; sha256="15nkr24hgv1286h9b6sdhlpljnm98fi5mmpsygl76h24dayy3854"; depends=[]; }; boilerpipeR = derive { name="boilerpipeR"; version="1.3"; sha256="0467bjqhdmi3p02fp0r7rgm00x9ry464f2hniav990qzsw8i16q6"; depends=[rJava]; }; bold = derive { name="bold"; version="0.2.6"; sha256="15hnbspp5s293v2jykmirf9rvdgpkd71h431gizz71ssayanzp67"; depends=[assertthat httr jsonlite plyr reshape stringr XML]; }; @@ -2773,15 +2786,16 @@ brew = derive { name="brew"; version="1.0-6"; sha256="1vghazbcha8gvkwwcdagjvzx6y brewdata = derive { name="brewdata"; version="0.4"; sha256="1i8i3yhyph212m6jjsij61hz65a5rplxw8y2xqf6daqiisam5q6i"; depends=[RCurl stringdist XML]; }; brglm = derive { name="brglm"; version="0.5-9"; sha256="14hxjamxyd0npak8wyfmmb17qclj5f86wz2y9qq3gbyi2s1bqw2v"; depends=[profileModel]; }; bride = derive { name="bride"; version="1.3"; sha256="03k9jwklg1l8sqyjfh914570880ii0qb5dd9l0bg0d0qrghbj0rk"; depends=[]; }; -brms = derive { name="brms"; version="0.4.0"; sha256="0bq21zavy0nziyg3z9g0jjxpj2ny36yvx5f3fkxrj9xlihp8fwlr"; depends=[abind ggmcmc ggplot2 gridExtra Rcpp reshape2 rstan]; }; +brms = derive { name="brms"; version="0.4.1"; sha256="0kkkg2wp49f6iclbahxlrnz5cczv3qs2qb9jazflshgpnnn0vqqy"; depends=[abind ggmcmc ggplot2 gridExtra Rcpp reshape2 rstan]; }; brnn = derive { name="brnn"; version="0.5"; sha256="0kf2fdgshk8i3jlxjfgpdfq08kzlz3k9s7rdp4bg4lg3khmah9d1"; depends=[Formula]; }; -broman = derive { name="broman"; version="0.55-2"; sha256="04pg362gmxg5lvrv333mjq06lv0q3a1mq6wrbmy87jch6f10lazi"; depends=[assertthat ggplot2 jsonlite RPushbullet]; }; +broman = derive { name="broman"; version="0.59-5"; sha256="0sl7ppdy0d3mnnp7vz98ingv9irv58xjazf3rx473qw811ybcjdn"; depends=[assertthat ggplot2 jsonlite RPushbullet]; }; broom = derive { name="broom"; version="0.3.7"; sha256="00z4kwxdqp6g35g4x6js9rc96z8i40hzgvhf5frj9dwfpxclk145"; depends=[dplyr plyr psych stringr tidyr]; }; bshazard = derive { name="bshazard"; version="1.0"; sha256="151c63pyapddc4z77bgkhmd7rsa1jl47x8s2n2s8yc6alwmj6dvs"; depends=[Epi survival]; }; bspec = derive { name="bspec"; version="1.5"; sha256="0jynvir7z4q1vrvhdn6wijdrjfrkk4544nlawabw2fnfxss91a91"; depends=[]; }; bspmma = derive { name="bspmma"; version="0.1-1"; sha256="0bd6221rrbxjvabf1lqr9nl9s0qwav47gc56sxdw32pd99j9x5a9"; depends=[]; }; bst = derive { name="bst"; version="0.3-4"; sha256="1s7qv2q9mcgg1c5mhblqg3nk9hary4pq6z0xgi3a6rs1929mgdyf"; depends=[gbm rpart]; }; bsts = derive { name="bsts"; version="0.6.2"; sha256="0m18yl9c12p19psx3iz7swlblgbkmyyvfls5g74gm8qbbhbxmdsk"; depends=[BH Boom BoomSpikeSlab xts zoo]; }; +btergm = derive { name="btergm"; version="1.5.2"; sha256="1llf9f9qkiw0pnbsnsybyxgch92dyzwdr77bcxqhipbmdb8fdckd"; depends=[boot coda ergm Matrix network ROCR sna speedglm statnet statnet_common texreg xergm_common]; }; btf = derive { name="btf"; version="1.1"; sha256="0n1h4hmjpvj97mpvannh3s5l08m4zfv0w64hrgdv4s5808miwfzc"; depends=[coda Matrix Rcpp RcppEigen]; }; bujar = derive { name="bujar"; version="0.1-4"; sha256="0v48mkg78sy91z1z4xvy2r3xmay74615kzqxjqlclkk20999z56m"; depends=[earth elasticnet gbm mboost mda ncvreg rms]; }; bursts = derive { name="bursts"; version="1.0-1"; sha256="172g09d1vmwl83xs6gr4gfblqmx3apvblpzdr5d7fcw1ybsx0kj6"; depends=[]; }; @@ -2803,6 +2817,7 @@ calibrate = derive { name="calibrate"; version="1.7.2"; sha256="010nb1nb9y7zhw2k calibrator = derive { name="calibrator"; version="1.2-6"; sha256="1arprrqmczbhc1gl85fh37cwpcky8vvqdh6zfza3hy21pn21i4kh"; depends=[cubature emulator]; }; calmate = derive { name="calmate"; version="0.12.0"; sha256="1jd1ag1v10bpgkqpf5134av0yc7xph1679q40y541kyr59df0lxw"; depends=[aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; camel = derive { name="camel"; version="0.2.0"; sha256="0krilird8j69zbll96k46pcys4gfkcnkisww138wslwbicl52334"; depends=[igraph lattice MASS Matrix]; }; +camtrapR = derive { name="camtrapR"; version="0.97.1"; sha256="1kcq4wyfxz4zs90wib0siiv50qlrkm1z4p6r4wfs4j126cvxq95q"; depends=[overlap]; }; cancerTiming = derive { name="cancerTiming"; version="3.0.0"; sha256="1sc5mz2gnrzvkc9kfnspq9vddk48a0a99yyywkwy1vvj0q2dgmyn"; depends=[gplots LearnBayes]; }; candisc = derive { name="candisc"; version="0.6-7"; sha256="1g2vypcniy94h462kylmzraa6q3ys9m0r1cn21dm8rzzjxid9g3g"; depends=[car heplots]; }; cape = derive { name="cape"; version="1.3"; sha256="1qvjbnxydc16mflg1rmgp2kgljcna8vi88w34cs6k12wpgxmvz1f"; depends=[corpcor evd fdrtool igraph Matrix qpcR shape]; }; @@ -2829,7 +2844,7 @@ catenary = derive { name="catenary"; version="1.1"; sha256="0khdk61fh8ngr70qf9i2 cati = derive { name="cati"; version="0.99"; sha256="1xghdqmqfwi0wnzvrd896z4snyjqqs9kw3whmkd3cph8zf0jl931"; depends=[ade4 ape e1071 FD geometry hypervolume mice nlme rasterVis vegan]; }; catnet = derive { name="catnet"; version="1.14.8"; sha256="03y7ddjyra3cjq7savdgickmw82ncx4k01rn752sks6rpl6bjslc"; depends=[]; }; catspec = derive { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; }; -causaleffect = derive { name="causaleffect"; version="1.1.3"; sha256="04wbwl40iwyqi1j5ngss9rlsrp21qdr9pcp32ckl9g61qj8f6jxa"; depends=[ggm igraph XML]; }; +causaleffect = derive { name="causaleffect"; version="1.2.0"; sha256="0dw2660g958ni086jhqr084hxfsf7rnv30qyx56vi8l5qbapsxaw"; depends=[ggm igraph XML]; }; causalsens = derive { name="causalsens"; version="0.1.1"; sha256="1z92ckqa07ajm451wrldxx9y43nawlvj2bsz0afxc9mrhjwjg5dh"; depends=[]; }; cba = derive { name="cba"; version="0.2-15"; sha256="1qw1r5drxip4y1a59hwz92iw50nj3vkxynsisv28srnwr58imnaj"; depends=[proxy]; }; ccChooser = derive { name="ccChooser"; version="0.2.6"; sha256="1vgp4zhg46hcf9ma2cmwgnfrqkmq1arh0ahyzjpfk3817vh7disc"; depends=[cluster]; }; @@ -2891,7 +2906,7 @@ chromer = derive { name="chromer"; version="0.1"; sha256="0fzl2ahvzyylrh4247w9yj chromoR = derive { name="chromoR"; version="1.0"; sha256="1x11byr6i89sdk405h6jd2rbvgwrcvqvb112bndv2rh9jnrvcw4z"; depends=[gdata haarfisz]; }; chron = derive { name="chron"; version="2.3-47"; sha256="1xj50kk8b8mbjpszp8i0wbripb5a4b36jcscwlbyap8n4487g34s"; depends=[]; }; cin = derive { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; }; -circlize = derive { name="circlize"; version="0.2.5"; sha256="0kc58cin98a5w63iz20kwpll7129l1ww455hjjp4yvlpnsr6m038"; depends=[GlobalOptions shape]; }; +circlize = derive { name="circlize"; version="0.3.0"; sha256="0hd74fss5f3nr0m7vdb6apkgplydhqkknad4ng4frfyf03pnxkpx"; depends=[GlobalOptions shape]; }; circular = derive { name="circular"; version="0.4-7"; sha256="1kgis2515c931ir76kpxnjx0cscw4n09a5qz1rbrhf34gv81pzqw"; depends=[boot]; }; cit = derive { name="cit"; version="1.4"; sha256="0axmi41bydkj512jscil9mqz9g6f11khl8hi6fci96wnm9x8gw7s"; depends=[]; }; citbcmst = derive { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; }; @@ -2911,7 +2926,7 @@ clickstream = derive { name="clickstream"; version="1.1.5"; sha256="010bf7rxicv4 clifro = derive { name="clifro"; version="2.4-0"; sha256="1bjsfk4m7hgq8k1mw07zx34ibgmpxjw8sig9jjzsr5mp3v13kwp8"; depends=[ggplot2 lubridate RColorBrewer RCurl reshape2 scales selectr XML]; }; climdex_pcic = derive { name="climdex.pcic"; version="1.1-6"; sha256="0dyhqxrma8g4ny4afv6drr885m88q2b8g1n19yy3yjbrbddyz8yl"; depends=[caTools PCICt Rcpp]; }; clime = derive { name="clime"; version="0.4.1"; sha256="0qs9i7cprxddg1cmxhnmcfhl7v7g1r519ff2zfipxbs59m5xk9sf"; depends=[lpSolve]; }; -climwin = derive { name="climwin"; version="0.1.0"; sha256="1yfnhqmhq9bbkhq1rygwmv02kczz3qih407sndf5j99hifpm6cfn"; depends=[evd ggplot2 gridExtra lme4 lubridate MuMIn reshape]; }; +climwin = derive { name="climwin"; version="0.1.1"; sha256="0idn3nlnlgm81npxkszgk5fph32z35hcs24a9qkam4j95nk7jfyn"; depends=[evd ggplot2 gridExtra lme4 lubridate MuMIn reshape]; }; clinUtiDNA = derive { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; }; clinfun = derive { name="clinfun"; version="1.0.10"; sha256="1q69qn7ib0mzpx5cv69fcgflp9rfmys5j33lqdj4b3g1z036bqrr"; depends=[mvtnorm]; }; clinsig = derive { name="clinsig"; version="1.0-5"; sha256="1jb2qk6hfvms85whymrfpgvjp8pv33fbllpl8jg80yg1ppmg2jcg"; depends=[]; }; @@ -2929,7 +2944,7 @@ clusterGeneration = derive { name="clusterGeneration"; version="1.3.4"; sha256=" clusterGenomics = derive { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; }; clusterPower = derive { name="clusterPower"; version="0.5"; sha256="1g2qpvizyk4q3qlgvar436nrfqxwp5y8yi2y6rch9ak5mbg3yzqb"; depends=[lme4]; }; clusterRepro = derive { name="clusterRepro"; version="0.5-1.1"; sha256="0vsf6cq6d51a4w23ph8kdz2h8dfpzyd6i85049p2wakn1kdvkz5p"; depends=[]; }; -clusterSEs = derive { name="clusterSEs"; version="2.0.1"; sha256="186916x3dh8cqy2zrqgksdjbka7hrslbdjj0iz3w3lpy9rq761lz"; depends=[AER Formula lmtest mlogit plm sandwich]; }; +clusterSEs = derive { name="clusterSEs"; version="2.1"; sha256="1r1cwnx7kdisq6v9ssr0z270yhfkkq3jyg2rq81l43dx7a6yv04y"; depends=[AER Formula lmtest mlogit plm sandwich]; }; clusterSim = derive { name="clusterSim"; version="0.44-2"; sha256="1xf3byri6mwlf89n896bxffmf3c6yqqh992npg9sqznx955hcggv"; depends=[ade4 cluster e1071 MASS R2HTML rgl]; }; clusterfly = derive { name="clusterfly"; version="0.4"; sha256="0mxpn7aywqadyk43rr7dlvj0zjcyf4q7qbqw5ds38si7ik34lkrg"; depends=[e1071 plyr reshape2 rggobi RGtk2]; }; clustergas = derive { name="clustergas"; version="1.0"; sha256="1vf4czpwk71yxd26vm5sal0ml20ssjrq4bmk31yzxydpxn495fg8"; depends=[cluster]; }; @@ -2944,7 +2959,7 @@ cmaes = derive { name="cmaes"; version="1.0-11"; sha256="1hwf49d1m660jdngqak9pqa cmm = derive { name="cmm"; version="0.8"; sha256="1661v2lzxgf4s37wdsrnbsvqwppcr7mbp70i1xsysfzki1z6xr19"; depends=[]; }; cmprsk = derive { name="cmprsk"; version="2.2-7"; sha256="1imr3wpnj4g57n2x4ryahl4lk8lvq9y2r7319zv3k82mznha8bcm"; depends=[survival]; }; cmrutils = derive { name="cmrutils"; version="1.2-2"; sha256="0gc4sx8g9364sybmrqdjdvddqjd9ps6v205kaw0nqdx30xn96hmm"; depends=[chron]; }; -cmsaf = derive { name="cmsaf"; version="1.4"; sha256="1pdfwsy9cjzikld19dh1fhq16l03wha5pg144wp3j1g78cldyb08"; depends=[fields ncdf4 raster RNetCDF sp]; }; +cmsaf = derive { name="cmsaf"; version="1.5"; sha256="06gmdxiss71qn3gaw4cs3wp0mizyny1ln3ymjlnp6kh3v9vzkjkw"; depends=[fields ncdf4 raster sp]; }; cmvnorm = derive { name="cmvnorm"; version="1.0-1"; sha256="00cm7zfxbc5md3p6sakan64a6rzz7nbq0bqq9ys2iyxpilxalj3m"; depends=[elliptic emulator]; }; cna = derive { name="cna"; version="1.0-3"; sha256="1iy0ispazhib30kh5wp3jziiyf0992nrdklrq80n0w3zhjyi21rh"; depends=[]; }; cncaGUI = derive { name="cncaGUI"; version="1.0"; sha256="1v55kvrc05bsm1qdyfw3r3h64wlv3s6clxbr8k512lfk99ry42kn"; depends=[MASS plotrix rgl shapes tcltk2 tkrplot]; }; @@ -3071,7 +3086,7 @@ crawl = derive { name="crawl"; version="1.4-1"; sha256="175w5933h5hhhjnrc0l1kg5q crayon = derive { name="crayon"; version="1.3.1"; sha256="0d38fm06h272a8iqlc0d45m2rh36giwqw7mwq4z8hkp4vs975fmm"; depends=[memoise]; }; crblocks = derive { name="crblocks"; version="0.9-1"; sha256="1m6yy6jb1dld7m9jaasms5ps8sn3v039jvlk8b0c08hmm7y0rm3z"; depends=[]; }; crch = derive { name="crch"; version="0.9-0"; sha256="0kd71lv239sn08f3v63k18dxxn6zbk3m0znx2xrmd4a2akrqwjsj"; depends=[Formula ordinal]; }; -credule = derive { name="credule"; version="0.1.2"; sha256="1qzvm2v4p27c58nwkr31s27fyb1hm41qdvyi04jc4jlvwi66747g"; depends=[]; }; +credule = derive { name="credule"; version="0.1.3"; sha256="1vciqkxkf93z067plipvhbks9k9sfqink5rhifzbnwc2c5gxp5mx"; depends=[]; }; crimCV = derive { name="crimCV"; version="0.9.3"; sha256="1p2cma78fb9a2ckmwdvpb6fc0818xw2mvq565dgiimgkdmmr0iid"; depends=[]; }; crimelinkage = derive { name="crimelinkage"; version="0.0.3"; sha256="018ni9jgnm4k8vybz99drsx8phb0ar3x0raa5ydkfpgqp525sayi"; depends=[geosphere igraph]; }; crmn = derive { name="crmn"; version="0.0.20"; sha256="1kl1k1s2gm63f9768cg8w4j6y1gq4hws3i7hdfhj7k9015s0a25p"; depends=[Biobase pcaMethods]; }; @@ -3086,7 +3101,7 @@ crrSC = derive { name="crrSC"; version="1.1"; sha256="171cw56q2yv1vb4qd0va75i2q8 crrp = derive { name="crrp"; version="1.0"; sha256="1fq54jr6avrli91a4z1hp5img4kghyw1yvjr5xyccsanf9i35x8r"; depends=[cmprsk Matrix survival]; }; crrstep = derive { name="crrstep"; version="2015-2.1"; sha256="03vd97prws9gxc7iv3jfzffvlrzhjh0g6kyvclrf87gdnwifyn1z"; depends=[cmprsk]; }; crs = derive { name="crs"; version="0.15-24"; sha256="08k8vim4n85ll16zpkwbf3riz641kafn699qsg0h746zqzi1kfn7"; depends=[boot np quantreg rgl]; }; -crunch = derive { name="crunch"; version="1.3.2"; sha256="021xzhxmid5r9f9c02vkywp498xmgyqcdg0yb20j507dabkbayjr"; depends=[httr jsonlite RCurl]; }; +crunch = derive { name="crunch"; version="1.4.2"; sha256="141m8kmci7fdvi1dzfpgyx5fg435pz4ggsjv972s0n01wjwifp8i"; depends=[curl httr jsonlite]; }; cruts = derive { name="cruts"; version="0.1"; sha256="0p2iiccjf1414g5xp6rcww58vimh2ahj0ghak1mrjyvgb4q6zgh3"; depends=[lubridate ncdf raster sp stringr]; }; csSAM = derive { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; }; csampling = derive { name="csampling"; version="1.2-2"; sha256="0gj85cgc3lgv7isqbkng4wgzg8gqcic89768q2p23k4jhhn6xm2w"; depends=[marg statmod survival]; }; @@ -3096,6 +3111,7 @@ csn = derive { name="csn"; version="1.1.3"; sha256="102w1qh9hgz4j9lh5hnbw1z3b7p0 csrplus = derive { name="csrplus"; version="1.03-0"; sha256="0kljndmiwblsvvdnxfywida9k0dmdwjq63d934l5yl6z7k4zd0xa"; depends=[sp]; }; cstar = derive { name="cstar"; version="1.0"; sha256="1zws4cq5d37hqdxdk86g85p2wwihbqnkdsg48vx66sgffsf1fgxd"; depends=[]; }; csvread = derive { name="csvread"; version="1.2"; sha256="1zx43g4f4kr7jcmiplzjqk2nw1g5kmmfap85wk88phf6fp0w8l5p"; depends=[]; }; +ctmm = derive { name="ctmm"; version="0.2.7"; sha256="07dh6ginqp4xj7g2sd27xsxiwwbvdvkpz65kv9kasv6flk9fwy0a"; depends=[expm manipulate MASS Matrix numDeriv raster rgdal sp]; }; cts = derive { name="cts"; version="1.0-19"; sha256="16f6nah3w63bz8b9xlhi3a7mpkiywq6gqkxgm5am90g0bqg5j3py"; depends=[]; }; ctv = derive { name="ctv"; version="0.8-1"; sha256="1fmjhh4vr4vcvqg76dzp1avqappsap5piki1ixahikwbwirxcwvw"; depends=[]; }; cubature = derive { name="cubature"; version="1.1-2"; sha256="1vgyvygg37b6yhy8nkly4w6p01jsqg2kyam4cn0vvml5vjdlc18a"; depends=[]; }; @@ -3118,7 +3134,7 @@ cvplogistic = derive { name="cvplogistic"; version="3.1-0"; sha256="1lm66nn0q766 cvq2 = derive { name="cvq2"; version="1.2.0"; sha256="19k95xg2y3wd4mx3wvbrc1invybd446g13vsp3dv05nw2kx4f6w8"; depends=[]; }; cvxbiclustr = derive { name="cvxbiclustr"; version="0.0.1"; sha256="00k75zy8v6qd5fg0h258i5z8ljjkfgkxz45cspysl1ap89d5n7df"; depends=[igraph Matrix]; }; cvxclustr = derive { name="cvxclustr"; version="1.1.1"; sha256="0idmx4wgz4d0b1xzmlq5bsk2f2q38lpf9c117hg97xsfndzn7vqj"; depends=[igraph Matrix]; }; -cwhmisc = derive { name="cwhmisc"; version="5.0"; sha256="0b70ssss48kpjyimwm8hwcx82whg77j40qxaaj4vhhqc8d2bzgd2"; depends=[lattice]; }; +cwhmisc = derive { name="cwhmisc"; version="6.0"; sha256="13lgpxl957lbf333m1a17ad8iy3kjfrzav0sxx7w3vnsj98aqa43"; depends=[lattice]; }; cwm = derive { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; }; cxxfunplus = derive { name="cxxfunplus"; version="1.0"; sha256="0kyy5shgkn7wikjdqrxlbpfl3zkkv4v1p8a1vv0xkncwarjs4n8d"; depends=[inline]; }; cycloids = derive { name="cycloids"; version="1.0"; sha256="00pdxny11mhfi8hf76bfyhd1d53557wcbl2bqwjzlpw5x3vdnsan"; depends=[]; }; @@ -3192,7 +3208,7 @@ demi = derive { name="demi"; version="1.1.2"; sha256="04dq4db9ibvv91nm0gz8dfbgv1 deming = derive { name="deming"; version="1.0-1"; sha256="00v59qb6qwbwsvcwi59d0c0g3czfz1190ccj4dx6yarizr4g6cy8"; depends=[boot]; }; demoKde = derive { name="demoKde"; version="0.9-3"; sha256="1nkvsjms1gfvjz5l7zza0cgx4yqmn2kgnax44pysn0zqmhfny8bw"; depends=[]; }; demography = derive { name="demography"; version="1.18"; sha256="17r7sz5ikngc4qg495wmn99xawmllpx7rw2gpv8q8bypbc47wlfv"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; }; -dendextend = derive { name="dendextend"; version="1.0.1"; sha256="1q2lhl1h1f9ga3anqcdhzksg8kqri6gwl9a8mjzs8yr17cs51ff6"; depends=[magrittr whisker]; }; +dendextend = derive { name="dendextend"; version="1.1.0"; sha256="0gpxifsfhzdrif33hcsqs462vfrs44q6406w9zipzffywy5i5mvh"; depends=[magrittr whisker]; }; dendextendRcpp = derive { name="dendextendRcpp"; version="0.6.1"; sha256="125kjlfcj7y282j5g62c6j5hflvwngrm70waxym0lzr7xldwx7bk"; depends=[dendextend Rcpp]; }; dendroextras = derive { name="dendroextras"; version="0.2.1"; sha256="0k1w374r4fvfcbzhrgcvklccjggyz755z7wc2vqfi3c5hvdb9ns4"; depends=[]; }; dendsort = derive { name="dendsort"; version="0.3.2"; sha256="0qj65jraj6ksmsfsrc4f3y8m7x5lqg9bqc9yb5s3bav2r8qjyhv6"; depends=[]; }; @@ -3207,7 +3223,7 @@ depth = derive { name="depth"; version="2.0-0"; sha256="1aj4cch3iwb6vz0bzj4w5r6j depthTools = derive { name="depthTools"; version="0.4"; sha256="1699r0h1ksgrlz9xafw2jnqfsc7xs0yaw97fc6dv3r11x6gxk00y"; depends=[]; }; dequer = derive { name="dequer"; version="1.0"; sha256="1xf2kl6ppgsplqwhxxyak39575bjijh81snq534yndf31pdqqhd7"; depends=[]; }; descomponer = derive { name="descomponer"; version="1.2"; sha256="08hc3p4l8dy1h2z8ijifwlgidmac9b29g1k725yzwzbdr5jzvnzl"; depends=[taRifx]; }; -descr = derive { name="descr"; version="1.1.1"; sha256="1flnz05j390izwadsv2l5bcxgl6zmq4vzz1aycfifjz75zyqqy8s"; depends=[xtable]; }; +descr = derive { name="descr"; version="1.1.2"; sha256="1bqr63s2w0gak117506f5v7k9wfj08cn6jy6idw5ii7x6jjh6xx7"; depends=[xtable]; }; deseasonalize = derive { name="deseasonalize"; version="1.35"; sha256="1fjsa7g34dckjs6mx9b10m99byxagggm0p9pw2f1vmpjqlasin0l"; depends=[FitAR lattice]; }; desiR = derive { name="desiR"; version="1.0"; sha256="10c9ld918yg5zgvf40bhlsj2i7w6i08ws26q799w9ma9splgq8sk"; depends=[]; }; designGG = derive { name="designGG"; version="1.1"; sha256="1x043j36llwd7kd4skbpl2smz2ybsxjqf5yd1xwqmardq60gdv2w"; depends=[]; }; @@ -3266,7 +3282,7 @@ displayHTS = derive { name="displayHTS"; version="1.0"; sha256="0mqfdyvn2c5c3204 dispmod = derive { name="dispmod"; version="1.1"; sha256="141gzhnmxxl495cpjgd4wnvdrbz6715m6sd1pycrbaqrsdc1pv57"; depends=[]; }; disposables = derive { name="disposables"; version="1.0.1"; sha256="1gmmf34hq8vm2gjg1560hkarppxmzakymgjbpzbpy2j471kd9s7a"; depends=[]; }; dissUtils = derive { name="dissUtils"; version="1.0"; sha256="00fzlmkdfw2s3k824wp2pk3v7cvxnywi1hfp86g4mm95z2qlw9br"; depends=[]; }; -distcomp = derive { name="distcomp"; version="0.25.2"; sha256="1jzsvd4q4pz6gk8a09rq20mzvifpl01d2913hhssdnjqjhaiwy6g"; depends=[digest httr jsonlite R6 shiny stringr survival]; }; +distcomp = derive { name="distcomp"; version="0.25.3"; sha256="1rjgzwh3i17w0r9qdiix88px1ddynkfwwzn78g6s3f8kjksiackn"; depends=[digest httr jsonlite R6 shiny stringr survival]; }; distfree_cr = derive { name="distfree.cr"; version="1.0"; sha256="13y714l6b3kkpp75fdrsbdclgj1vw1xsvbj9pxi4lkwf11wwmrqr"; depends=[]; }; distillery = derive { name="distillery"; version="1.0-2"; sha256="12m4cacvc18fd3aayc8iih5q6bwsmvf29b55fwp7vs8wp1h8nd8c"; depends=[]; }; distory = derive { name="distory"; version="1.4.2"; sha256="12j19cb1b4prm8m43gya15kia1ii1k0yy7hkngpn2vsyk7n2z65m"; depends=[ape]; }; @@ -3319,7 +3335,7 @@ dplRCon = derive { name="dplRCon"; version="1.0"; sha256="10xnawgnhxp5y949fxs1vv dplyr = derive { name="dplyr"; version="0.4.2"; sha256="1b0nb7agzb515jrm33sv8yhszsf06d9fga6pgdxi2kwl71vjfrd6"; depends=[assertthat BH DBI lazyeval magrittr R6 Rcpp]; }; dpmixsim = derive { name="dpmixsim"; version="0.0-8"; sha256="0paa2hmpd6bqf0m7p9j7l2h3j18lm64ya6ya8zvp55wm8pf7xgqg"; depends=[cluster oro_nifti]; }; dpmr = derive { name="dpmr"; version="0.1.7-1"; sha256="0nh45hg9za9w4w4syrrg54s1fpn6iikv431qkdjyinv8y1a3klga"; depends=[digest httr jsonlite magrittr rio]; }; -dr = derive { name="dr"; version="3.0.9"; sha256="0gmxa5mbmkz54l75ss6kj5ka5kingf02pqj0xsfjxfv0311hwm52"; depends=[MASS]; }; +dr = derive { name="dr"; version="3.0.10"; sha256="0dmz4h7biwrn480i66f6jm3c6p4pjvfv24pw1aixvab2vcdkqlnf"; depends=[MASS]; }; drat = derive { name="drat"; version="0.0.4"; sha256="0pq74a0f1pkgfzgrh0r2xa2xkgxbanp8a5v13bmma09ghy5vnrhm"; depends=[]; }; drawExpression = derive { name="drawExpression"; version="1.0"; sha256="0c2daicqrjlqf7s788cknzvw9c6rm500lgmwfr7z03bq7bd2ah90"; depends=[]; }; drc = derive { name="drc"; version="2.5-12"; sha256="1gw78n0w262wl6mdm5wvyp3f0hvrb2kj714acdxz84h2znxr9879"; depends=[car gtools MASS multcomp plotrix scales]; }; @@ -3333,11 +3349,12 @@ ds = derive { name="ds"; version="3.0"; sha256="10xp575l0wh85wg32k3as02kgqm9ax9n dsample = derive { name="dsample"; version="0.91.1.5"; sha256="02ksm4d9ybz4w7j3c9rjqh262k6rqs1bdhj3p7w5rcaskpc6qz9s"; depends=[]; }; dse = derive { name="dse"; version="2014.11-1"; sha256="0fl1av8zd0csbsk6fplcxgqsb50qr1baasw2jrqv6h83j2xwph2l"; depends=[setRNG tfplot tframe]; }; dslice = derive { name="dslice"; version="1.1.4"; sha256="0srqw1kznbjl1v6dpgh7vsrpf9k3zj7j55zw9k50jsbw2z4xqzfw"; depends=[ggplot2 Rcpp scales]; }; -dsm = derive { name="dsm"; version="2.2.5"; sha256="0sfsfzcsqnvjkc5l7h5xq8p2jsgwxfzds75sqs58a0kzagcm1b05"; depends=[ggplot2 mgcv mrds nlme statmod]; }; +dsm = derive { name="dsm"; version="2.2.9"; sha256="147c94bk73ss7bcliz4a65zx0lhf3gap9ygcc82yvf7sibpasnqd"; depends=[ggplot2 mgcv mrds nlme statmod]; }; dst = derive { name="dst"; version="0.3"; sha256="1gdf4sjk2svywx2m6z22d383xppsm6dm108w93pcwfs8fpcdwxb9"; depends=[]; }; dti = derive { name="dti"; version="1.2-0.1"; sha256="09ad7mwa53dk1jlddkql3wm1s2diyqij7prd5klh59j21kvkf0hy"; depends=[adimpro awsMethods gsl oro_dicom oro_nifti quadprog rgl]; }; dtt = derive { name="dtt"; version="0.1-2"; sha256="0n8gj5iylfagdbaqirpykb01a9difsy4zl6qq55f0ghvazxqdvmn"; depends=[]; }; dtw = derive { name="dtw"; version="1.17-1"; sha256="0kbf38a14k112vdi7yaql18w0sj694smlm6pmdw5q4sqpk7azhqg"; depends=[proxy]; }; +dtwclust = derive { name="dtwclust"; version="0.1.0"; sha256="0q0d9qnppj6wdc5dlic7x53dpn7l99lrmkbhwkhdj4w1mcbsg9v0"; depends=[caTools dtw flexclust ggplot2 modeltools proxy reshape2]; }; dualScale = derive { name="dualScale"; version="0.9.1"; sha256="11hqxprai0s5id6wk4n2q174r1sqx9fzw3fscvqd2cgw8cjn1iwl"; depends=[ff lattice Matrix matrixcalc vcd]; }; dummies = derive { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; }; dummy = derive { name="dummy"; version="0.1.3"; sha256="081a5h33gw6ym4isy91h6mcf247c2vsdygv9ll07a3mgjcjnk79p"; depends=[]; }; @@ -3359,7 +3376,7 @@ dynlm = derive { name="dynlm"; version="0.3-3"; sha256="0ym23gv2vkvvnxvzk5kh6xy4 dynpred = derive { name="dynpred"; version="0.1.2"; sha256="111ykasaiznn3431msj4flfhmjvzq7dd1mnzn1wklc5ndix1pvf9"; depends=[survival]; }; dynsim = derive { name="dynsim"; version="1.2"; sha256="0vd08mdv7yklhy5rqmhji0ff9284n2z15a3ij4ylw7a0hzlyp2m3"; depends=[ggplot2 gridExtra MASS]; }; dynsurv = derive { name="dynsurv"; version="0.2-2"; sha256="0418r7adki48pg3h7i1mgv3xpbryi520va3jpd03dx15zrq8zaqg"; depends=[BH ggplot2 nleqslv plyr reshape survival]; }; -e1071 = derive { name="e1071"; version="1.6-6"; sha256="1620w29mlx12kb93nxags1zgz628isr75f1q2ffn9mxsw13cc5d2"; depends=[class]; }; +e1071 = derive { name="e1071"; version="1.6-7"; sha256="1069qwj9gsjq6par2cgfah8nn5x2w38830761x1f7mqpmk0gnj3h"; depends=[class]; }; eHOF = derive { name="eHOF"; version="1.5.9"; sha256="187c85fp7q63ipqd3qzivlv9asm9zc49rvw33j39js03mak4r0d2"; depends=[lattice mgcv]; }; eRm = derive { name="eRm"; version="0.15-5"; sha256="0g4avcr709brvzcbmqmq35c7zvgx1hkf5nq6djsprzkgvh6rznjn"; depends=[lattice MASS Matrix]; }; eVenn = derive { name="eVenn"; version="2.2"; sha256="0k6m61z902spxxrc38504l73h022w5v74g39h4azd1ibr35yrl7j"; depends=[]; }; @@ -3487,7 +3504,7 @@ eventstudies = derive { name="eventstudies"; version="1.1"; sha256="13l2yhmlpiid evir = derive { name="evir"; version="1.7-3"; sha256="1kn139vvzdrx5r9jayjb4b0803b0bbppxk68z00gdb50mxgvi593"; depends=[]; }; evmix = derive { name="evmix"; version="2.6"; sha256="1rc52mqmzl05n5n1lr990czqgpq9h2x8shnv6s7hvr8896kjasjm"; depends=[gsl MASS SparseM]; }; evobiR = derive { name="evobiR"; version="1.0"; sha256="12j01qzc4yrjpxbj39bl29f5ypxwk33c6qf0mjjbgpwn5g6fgsi4"; depends=[ape geiger seqinr stringr taxize]; }; -evolqg = derive { name="evolqg"; version="0.1-5"; sha256="1s9jh14ycymlajc285cczr9m529vv6la4bkv0lgk3dc0557m7q5w"; depends=[ape ggplot2 magrittr mvtnorm phytools plyr Rcpp reshape2 tidyr vegan]; }; +evolqg = derive { name="evolqg"; version="0.1-6"; sha256="1n37cvngaw5sqfw71k7kysxp848p6d4cir46959cqj9q3yvgffvc"; depends=[ape ggplot2 magrittr Matrix mvtnorm phytools plyr Rcpp reshape2 tidyr vegan]; }; evolvability = derive { name="evolvability"; version="1.1.0"; sha256="0lbyidb86yzvcfw86jfwnzbpijn64jr8fasycqq4h3r9c0x2by3j"; depends=[coda]; }; evt0 = derive { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; }; evtree = derive { name="evtree"; version="1.0-0"; sha256="0i37lkdfzvgby98888ndd5wzxs7y11sxf9mh6pqpqgwif05p4z3i"; depends=[partykit]; }; @@ -3560,7 +3577,7 @@ faoutlier = derive { name="faoutlier"; version="0.5"; sha256="1via1gggcj6cpdkyn6 far = derive { name="far"; version="0.6-5"; sha256="18lj2mgnn9s59ypkr19zzv0sffwpx9mgk975xmpvw4kkl84dykis"; depends=[nlme]; }; faraway = derive { name="faraway"; version="1.0.6"; sha256="10vj38chfnlz595pdi16v8gcwsbmn8a7p4gb0mm98dncyin5p2a3"; depends=[]; }; farsi = derive { name="farsi"; version="1.0"; sha256="0y14f86bccwjirdx33383wa605y7l7lr0w7ygvg8r7f7izkv7r3n"; depends=[]; }; -fast = derive { name="fast"; version="0.63"; sha256="00ag9d0dwn9al104y93m8dclbjqabr9liif8gr19v3gv6k2k6p2c"; depends=[zoo]; }; +fast = derive { name="fast"; version="0.64"; sha256="098rk6kszdx3szcwvwzcv7zlcd6qvqvbqch7q8ilas6vbki81ba4"; depends=[zoo]; }; fastGHQuad = derive { name="fastGHQuad"; version="0.2"; sha256="0yv3wdyj7hs1gr3rq08k520v0ldmv5zzng709xjx2kchhwhmy8ah"; depends=[Rcpp]; }; fastHICA = derive { name="fastHICA"; version="1.0.2"; sha256="1h794ybbii0k7v3x0r1499zxdqa1i1dpi3i7idzqdrffnb5kmwlv"; depends=[energy fastICA]; }; fastICA = derive { name="fastICA"; version="1.2-0"; sha256="0ykk78fsk5da2g16i4wji85bvji7nayjvkfp07hyaxq9d15jmf0r"; depends=[]; }; @@ -3580,7 +3597,7 @@ fbati = derive { name="fbati"; version="1.0-1"; sha256="1ia67dg9b61kc14mjg7065v0 fbroc = derive { name="fbroc"; version="0.2.1"; sha256="06qpdnh86klkbwiv593l57wnbamrmcj5ysabyrbjf9mr8mjzhkkj"; depends=[ggplot2 Rcpp]; }; fcd = derive { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[combinat glmnet MASS]; }; fclust = derive { name="fclust"; version="1.1.1"; sha256="0gxgyvz6nzqp5sdjhfdjmm3r4lf1b4min3s5rfddwdqiswzxg8m8"; depends=[]; }; -fcros = derive { name="fcros"; version="1.3"; sha256="1ylkma69gfc5ij3vvf1axyasya31qm5bwj2bjlvj12byf52wsiy8"; depends=[]; }; +fcros = derive { name="fcros"; version="1.4"; sha256="0bawzzyx4512kyvd44dgnswpxgilmzz5xf2bmrnfapc9p4xcfjfw"; depends=[]; }; fda = derive { name="fda"; version="2.4.4"; sha256="05rvrp29ip1wrk2wly06wdry2a2riynkx677nx5lg240lz12d6yw"; depends=[Matrix]; }; fda_usc = derive { name="fda.usc"; version="1.2.1"; sha256="1w0dw06vgviia4yy2v5mrq0jvnfvdp7y8f2x246v3xliqgjmg7as"; depends=[fda MASS mgcv rpart]; }; fdaMixed = derive { name="fdaMixed"; version="0.4"; sha256="15m13v71kqxd9gqiymgfkq0dvcpzp05576m8zkg08m0k067ga9bd"; depends=[Formula Rcpp RcppArmadillo]; }; @@ -3651,12 +3668,12 @@ fontcm = derive { name="fontcm"; version="1.1"; sha256="1z6b4qdgj5vhvjqj90sm1hp0 foodweb = derive { name="foodweb"; version="1-0"; sha256="1zm2a87g9bkpz90j9lax28s5hq1w7ia28qqb6vnvr1d7a47g9zi9"; depends=[rgl]; }; forams = derive { name="forams"; version="2.0-5"; sha256="1fh3m9896ksv1h7b027yb955bzyv70yafhqvn5crkzalzk3jpb0s"; depends=[vegan]; }; foreach = derive { name="foreach"; version="1.4.2"; sha256="097zk7cwyjxgw2i8i547y437y0gg2fmyc5g4i8bbkn99004qzzfl"; depends=[codetools iterators]; }; -forecTheta = derive { name="forecTheta"; version="1.0"; sha256="1ip6l27d37xqnmg8w285lq1y5j6akrjrviq4338c8sq075d8hckn"; depends=[forecast]; }; +forecTheta = derive { name="forecTheta"; version="1.1"; sha256="0cp582mwi9jf8nnb4p4hvzy86w8q12js3i8rp0gaq2xhm36w6v02"; depends=[forecast]; }; forecast = derive { name="forecast"; version="6.1"; sha256="1hwv3arcpkkhpj5n2dvpw2fyx687b6x6yakxx55cw9rrka70rx1k"; depends=[colorspace fracdiff nnet Rcpp RcppArmadillo timeDate tseries zoo]; }; foreign = derive { name="foreign"; version="0.8-65"; sha256="03zg48vjqqcq9ri4a53czpyp82hml409g2rmdnmbfw8c1isdqacf"; depends=[]; }; forensic = derive { name="forensic"; version="0.2"; sha256="0kn8wn6p3fm67w88fbarg467vfnb42pc2cdgibs0vlgzw8l2dmig"; depends=[combinat genetics]; }; forensim = derive { name="forensim"; version="4.3"; sha256="1jhlv9jv832qxxw39zsfgsf4gbkpyvywg11djldlr9vav7dlh3iw"; depends=[tcltk2 tkrplot]; }; -forestFloor = derive { name="forestFloor"; version="1.5"; sha256="1cpgjj2p4j14h2ks586nq8426k9nlnnwhnxniaack33rdy3axbdp"; depends=[kknn Rcpp rgl trimTrees]; }; +forestFloor = derive { name="forestFloor"; version="1.8.3"; sha256="1qxlkalq49ww290hz3dh4ha10qclaqbki063g2nxinrj4sqapap1"; depends=[ggplot2 gridExtra kknn Rcpp rgl]; }; forestplot = derive { name="forestplot"; version="1.1"; sha256="1h28lwqdizs450bm5hb8zfbmx633n8v5bj2p8mi4cl814sjjylr0"; depends=[]; }; formatR = derive { name="formatR"; version="1.2"; sha256="0dlj728qdm7wmxcxvw1ip64pl4ajgmi8ax69zafrn3306pg9y136"; depends=[]; }; formula_tools = derive { name="formula.tools"; version="1.5.4"; sha256="1qs7ls757qvh5gdkx32zslgpx1a4zk2vf8bbgjdax02jmlyp2qrp"; depends=[operator_tools]; }; @@ -3696,7 +3713,7 @@ fslr = derive { name="fslr"; version="1.4.4"; sha256="0k6973hd1q54q6243lir4xi3wl fso = derive { name="fso"; version="2.0-1"; sha256="02dr12bssiwn8s1aa1941hfpa4007gd65f3l4s74gs2vgjzdxf8s"; depends=[labdsv rgl]; }; ftnonpar = derive { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; }; fts = derive { name="fts"; version="0.9.9"; sha256="1qgp8xdwr5pp2b7nd8r717a6p8b6izwqrindx2d1d0lhhnqlcwhv"; depends=[BH zoo]; }; -ftsa = derive { name="ftsa"; version="4.3"; sha256="0hf3v83a5mh6s8y3hhvnwqmj55n707c8lgkpmxlc52gxykgnayjz"; depends=[colorspace forecast MASS pcaPP rainbow]; }; +ftsa = derive { name="ftsa"; version="4.4"; sha256="1nj1m1asvhp8x9cdi9ywk94yhh0x12crqp2hs1rw5fdfw8w6k0xy"; depends=[colorspace fda forecast MASS pcaPP rainbow sde]; }; fueleconomy = derive { name="fueleconomy"; version="0.1"; sha256="1svy5naqfwdvmz98l80j38v06563vknajisnk596yq5rwapl71vj"; depends=[]; }; fugeR = derive { name="fugeR"; version="0.1.2"; sha256="0kd90s91vzv0g3v9ii733h10d8y6i05lk21p5npb3csizqbdx94l"; depends=[Rcpp snowfall]; }; fun = derive { name="fun"; version="0.1-0"; sha256="0z4nq2w1wz1clc7cf87pf870hayxq5mpzhllfgwj4mmh2xpphnrf"; depends=[]; }; @@ -3805,6 +3822,7 @@ genasis = derive { name="genasis"; version="1.0"; sha256="1r0733cc2hss3f8dp19s1j gendata = derive { name="gendata"; version="1.1"; sha256="1r5bhmfblhk6d31v0byhp4a0pmpri6vk697zmmx9b0hvhda7mllf"; depends=[]; }; gender = derive { name="gender"; version="0.4.3"; sha256="0dhwhv2b86arpmyr89g69h8ikw0f2x27ig420jngfb9gxljj9phc"; depends=[devtools dplyr httr jsonlite]; }; genderizeR = derive { name="genderizeR"; version="1.2.0"; sha256="1a7vafspdd64wr47k1z391ff1ri5f8bynlgn876khcxzhm2vwdva"; depends=[data_table httr magrittr stringr tm]; }; +gendist = derive { name="gendist"; version="1.0"; sha256="0n3ax7iy40ymrxhmb88w31a4aacaps9f1iild42afin7i7vy4dq9"; depends=[]; }; geneListPie = derive { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; }; geneSignatureFinder = derive { name="geneSignatureFinder"; version="2014.02.17"; sha256="1s9jj87wnzzgm9hnws09yhrxdlb6jw56i3ddwznvmh8vpzrspv4h"; depends=[class cluster survival]; }; genepi = derive { name="genepi"; version="1.0.1"; sha256="1whhdlq9p8gmygv7464hvfz6dhm65gqq1dqls6hgpmw822zxgbd5"; depends=[]; }; @@ -3848,12 +3866,12 @@ ggenealogy = derive { name="ggenealogy"; version="0.1.0"; sha256="0shy6ylrx49ycc gglasso = derive { name="gglasso"; version="1.3"; sha256="0qqp5zak4xsakhydn9cfhpb19n6yidgqj183il1v7yi90qjfyn66"; depends=[]; }; ggm = derive { name="ggm"; version="2.3"; sha256="1n4y459x2i0jil8chjjqqjs28a8pzfxrws2fcjkg3il7zy0zwbw3"; depends=[igraph]; }; ggmap = derive { name="ggmap"; version="2.4"; sha256="06mdczacjnlzyr5sm1d099sqyf6anhlnn2bnjxni8h36100m5nm2"; depends=[digest geosphere ggplot2 jpeg mapproj plyr png proto reshape2 RgoogleMaps rjson scales]; }; -ggmcmc = derive { name="ggmcmc"; version="0.6"; sha256="12z0six1swpmisbm8x9a9dk19cd0f9yvzm92gc9qs484ihpcscvq"; depends=[dplyr ggplot2 tidyr]; }; +ggmcmc = derive { name="ggmcmc"; version="0.7.1"; sha256="00knrahhl1bbhgz04qyc9bk992k9x4axdd25kpx39jrr5rzz9b2r"; depends=[dplyr GGally ggplot2 tidyr]; }; ggparallel = derive { name="ggparallel"; version="0.1.1"; sha256="1z8w4bm4ahmmwbr87qlqhm8jlrqf7dhdvm1cf0xrwjlkmy6dqjvg"; depends=[ggplot2 plyr reshape2]; }; ggplot2 = derive { name="ggplot2"; version="1.0.1"; sha256="0794kjqi3lrxb33lr1mykd58959hlgkhdn259vj8fxrh65mqw920"; depends=[digest gtable MASS plyr proto reshape2 scales]; }; ggsubplot = derive { name="ggsubplot"; version="0.3.2"; sha256="1rrq47rf95hnwz8c33sbnpvc37sb6v2w37863hyjl6gc0bhyrvzb"; depends=[ggplot2 plyr proto scales stringr]; }; ggswissmaps = derive { name="ggswissmaps"; version="0.0.2"; sha256="1cl8m9j3d2kf8dbpq09q36v7nwkgz7khqds431l0kmkzq02qhddf"; depends=[ggplot2]; }; -ggtern = derive { name="ggtern"; version="1.0.5.0"; sha256="0ykgz3268381glkrv1gbn9qnyrkxsmihc3srv8zrldbq18zbr0a8"; depends=[ggplot2 gtable MASS plyr proto reshape2 scales sp]; }; +ggtern = derive { name="ggtern"; version="1.0.6.0"; sha256="10aiicvr2vklajmcacpa9ki30hvqjr8y9150mfx6fyqhk8c2r6kl"; depends=[ggplot2 gtable MASS plyr polyclip proto reshape2 scales sp]; }; ggthemes = derive { name="ggthemes"; version="2.2.1"; sha256="0d6h3ymxwxcii95wggxmyvihnwsl85nlqja2ac34dsfwlv75cc16"; depends=[colorspace ggplot2 proto scales]; }; ggvis = derive { name="ggvis"; version="0.4.2"; sha256="07arzhczvh2sgqv9h30n32s6l2a3rc98rid2fpz6kp7vlin2pk1g"; depends=[assertthat dplyr htmltools jsonlite lazyeval magrittr shiny]; }; ghyp = derive { name="ghyp"; version="1.5.6"; sha256="0y3915jxb2rf01f7r6111p88ijhmzyz4qsmy7vfijlilkz0ynn20"; depends=[gplots numDeriv]; }; @@ -3911,6 +3929,7 @@ gof = derive { name="gof"; version="0.9.1"; sha256="1s12gga9d6yizn2y7lzql4jd80lp goft = derive { name="goft"; version="1.1"; sha256="19mb2i2iri09v2dgkyl1ral2m7bzyizncnz24niwg13afpwbq12h"; depends=[gPdtest mvShapiroTest]; }; goftest = derive { name="goftest"; version="1.0-3"; sha256="0rwz8y23dsklwvmd4sxq0bcklsa7l47lbs5lkcdn58jsdzm7bfrq"; depends=[]; }; gogarch = derive { name="gogarch"; version="0.7-2"; sha256="03gpl73zc6kx4gni59xbg7b38dkpd7p4c7kvlqm46f58j257viik"; depends=[fastICA fGarch]; }; +googlePublicData = derive { name="googlePublicData"; version="0.15.7.28"; sha256="1bkfj88rn8ai0kbjbd0s3zih6iz018xybr13w2h9i6wdi3dhs75s"; depends=[XLConnect XML]; }; googleVis = derive { name="googleVis"; version="0.5.9"; sha256="0r182x6ccpdqkgqmqf26lvajhw954vqzm4bnyvpqif57nnzw4zpx"; depends=[RJSONIO]; }; googlesheets = derive { name="googlesheets"; version="0.1.0"; sha256="0c3a521i2nw5v6ydz0ci7vbxlzfv3bh39yi7njah25zfbxjgm751"; depends=[cellranger dplyr ggplot2 httr plyr stringr tidyr XML xml2]; }; goric = derive { name="goric"; version="0.0-8"; sha256="0ayac0yfkxrl13ckc2pwfqnmsrhmbg5bi6iwzx0fmh81vrlp0zrm"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; @@ -3983,10 +4002,10 @@ gvlma = derive { name="gvlma"; version="1.0.0.2"; sha256="0gj52hg665nmlwgbjh9yvz gwerAM = derive { name="gwerAM"; version="1.0"; sha256="1c3rzd1jf52a4dn63hh43m9s9xnjvqn67amlm9z1ndrnn6fwfg1b"; depends=[MASS Matrix]; }; gwrr = derive { name="gwrr"; version="0.2-1"; sha256="1fjk217pimnmxsimqp9sn02nr1mwy3hw3vsr95skbfsd6vdda14d"; depends=[fields lars]; }; h2o = derive { name="h2o"; version="3.0.0.30"; sha256="052m7ba4wgmvbx7bc1d449896ipj7gsgvw2lr07xlbs1zlqadak2"; depends=[RCurl rjson statmod]; }; -h5 = derive { name="h5"; version="0.9.1"; sha256="1q20i5hnfzr88kb63yvvgn7z39cvk514fj2770i29lm71jdph00q"; depends=[Rcpp]; }; +h5 = derive { name="h5"; version="0.9.2"; sha256="1fsd4wgks9xlyyrmfc8pcs81a7b6wpfcshyf41lr7sncsvbzs0cd"; depends=[Rcpp]; }; hSDM = derive { name="hSDM"; version="1.4"; sha256="1jq6hdnyv446ng62srip0b48kccf0qw3xqym3fprg74mjdy3inqr"; depends=[coda]; }; haarfisz = derive { name="haarfisz"; version="4.5"; sha256="1qmh4glwzqwqx3pvxc71rlcimp1l0plgdf380v9hk0b4gj7g3pkf"; depends=[wavethresh]; }; -hamlet = derive { name="hamlet"; version="0.7"; sha256="0f3gl5xvgdksaxk76dyv46hahc41f2j3pf9wp0rc0q7wpp5nfsjl"; depends=[]; }; +hamlet = derive { name="hamlet"; version="0.9.4"; sha256="0x8g7fxbns41zrlr4cmq6d523bajyny9kd4846lx2lma1q2jrn4s"; depends=[]; }; hapassoc = derive { name="hapassoc"; version="1.2-8"; sha256="0qs5jl0snzfchgpp6pabncwywxcmi743g91jvjiyyzw0lw85yv4s"; depends=[]; }; haplo_ccs = derive { name="haplo.ccs"; version="1.3.1"; sha256="0cs90zxxbvglz1af0lh37dw1gxa04k0kawzxamz2was3dbh19lbz"; depends=[haplo_stats survival]; }; haplo_stats = derive { name="haplo.stats"; version="1.6.11"; sha256="0j3zh4n2rly8dij8srm8ck6fl63haw6d27m3nfnrxywr87pljg14"; depends=[]; }; @@ -4088,7 +4107,7 @@ htmlwidgets = derive { name="htmlwidgets"; version="0.5"; sha256="1d583kk7g29r4s hts = derive { name="hts"; version="4.5"; sha256="1bjribmfczkx139z73b0cl3lzlw5n2byyyc5inqv9qgayz0dc6cp"; depends=[forecast Matrix Rcpp RcppEigen SparseM]; }; httk = derive { name="httk"; version="1.2"; sha256="016njh1cm21bmdrn94cbsmf36gzcwfg21bqp8nl100qb16d6yqq6"; depends=[deSolve msm]; }; httpRequest = derive { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; }; -httpuv = derive { name="httpuv"; version="1.3.2"; sha256="0vp3bz1nxi0ladlgi1r6wd480y0m2m0gsba2hrs73s9b8afrfh6v"; depends=[Rcpp]; }; +httpuv = derive { name="httpuv"; version="1.3.3"; sha256="0aibs0hf38n8f6xxx4g2i2lzd6l5h92m5pscx2z834sdvhnladxv"; depends=[Rcpp]; }; httr = derive { name="httr"; version="1.0.0"; sha256="1yprw8p4g8026jhravgg1hdwj1g51cpdgycyr5a58jwm4i5f79cq"; depends=[curl digest jsonlite mime R6 stringr]; }; huge = derive { name="huge"; version="1.2.6"; sha256="11njfd4i8q950apga6sdk84p4wk4qvp8bpg6yz9lgjrgj2hn14n2"; depends=[igraph lattice MASS Matrix]; }; humanFormat = derive { name="humanFormat"; version="1.0"; sha256="0zwjbl8s5dx5d57sfmq6myc6snximc56zl88h8y1s1jqphyn9sir"; depends=[testthat]; }; @@ -4212,6 +4231,7 @@ investr = derive { name="investr"; version="1.3.0"; sha256="057wq6c5r7hrg1nz7460 io = derive { name="io"; version="0.2.2"; sha256="07vifr1h8ldiam8ngp6yrx6mvdnmmnnsq3hcs2pyphws6hgdmwwh"; depends=[filenamer stringr]; }; ionflows = derive { name="ionflows"; version="1.1"; sha256="1k9yz82hbjwljyg4cmi675ppykrc2yq9md8x1hhkfxmp070whcxl"; depends=[Biostrings]; }; iosmooth = derive { name="iosmooth"; version="0.91"; sha256="03kyzhcl5lipaiajs53dc8jaazxv877nl0njbq88cp4af3gd6s82"; depends=[]; }; +iotools = derive { name="iotools"; version="0.1-12"; sha256="1b2crnhx84h1gp10sy2mkhi9vylp9z97ld16jijddzlf4v23bmlx"; depends=[]; }; ipdmeta = derive { name="ipdmeta"; version="2.4"; sha256="0k9wqpmrvqdh73brmdzv86a2dbyddjyyyqzqgp1vqb3k48k009s2"; depends=[nlme]; }; ipdw = derive { name="ipdw"; version="0.2-2"; sha256="1mvxs1039hv9m36jhi11qvjysmpmh7ms522q9phwmljv2nnl7ylz"; depends=[gdistance raster sp]; }; ipfp = derive { name="ipfp"; version="1.0"; sha256="1hpfbgygnpnl3fpx7zl728jyw00y3kbbc5f0d407phm56sfqmqwi"; depends=[]; }; @@ -4249,7 +4269,7 @@ itsmr = derive { name="itsmr"; version="1.5"; sha256="0l9m5is6d6pkpfkihx0jir5iv8 ivbma = derive { name="ivbma"; version="1.05"; sha256="0d7kg6pkdx1aj1i6kqs2r7j1klxxwymml63qnrq6a6fia3ck9kk9"; depends=[]; }; ivfixed = derive { name="ivfixed"; version="1.0"; sha256="0a26zrkvz0ffq4zxdx5vhr1nvsi9c15s6gvc1zy2pddjz31x2xi5"; depends=[Formula]; }; ivlewbel = derive { name="ivlewbel"; version="1.1"; sha256="0ykcfikm2i28s3fm6zzx8cjvpwhksg8an0rfr0b35gf7p69brgag"; depends=[gmm lmtest plyr]; }; -ivmodel = derive { name="ivmodel"; version="1.0"; sha256="14ic49vyikx5fiz2ccjmd53f0vcg3jh3fs6fqhl8w3hm9z9x4qvz"; depends=[Matrix]; }; +ivmodel = derive { name="ivmodel"; version="1.1"; sha256="18hq667ls552vq59dhirx5q9ky252p3cjvkhm3d017bdpi3m1hq5"; depends=[Matrix]; }; ivpack = derive { name="ivpack"; version="1.2"; sha256="0cr5acjrn41d3q0b77hlg2jmsbf1msvys9gcavm1blsryg2bc03c"; depends=[AER lmtest sandwich]; }; ivpanel = derive { name="ivpanel"; version="1.0"; sha256="0irjmkw3nnd8ssidvj23lr0hihlhd9acsbaznh88lknx53ijc2qv"; depends=[Formula]; }; ivprobit = derive { name="ivprobit"; version="1.0"; sha256="1kijq7k6iv2ybaxb08kqzm2s2k6wp2z50r01kxcq023pmyfjczwy"; depends=[]; }; @@ -4284,14 +4304,14 @@ kequate = derive { name="kequate"; version="1.4.0"; sha256="0vr45y4f6x3080pf3k53 kerdiest = derive { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; }; kergp = derive { name="kergp"; version="0.1.0"; sha256="00p3iziz6kjm1v7rpqa2lls1xgp2w3q754mj1x6bj24kx69xpc7g"; depends=[MASS numDeriv Rcpp testthat]; }; kernelFactory = derive { name="kernelFactory"; version="0.2.2"; sha256="1ms6732s17vx120xr2l423qmj0h880r522zsgp474pq3fxc0mr48"; depends=[AUC genalg kernlab randomForest]; }; -kernlab = derive { name="kernlab"; version="0.9-20"; sha256="0gwl3v8gxidzfmvwa2icqla8ypdgnmvcwxf54iwrvvy2csjx0w27"; depends=[]; }; +kernlab = derive { name="kernlab"; version="0.9-22"; sha256="1k0f8kwc3rncdfccqfs42670lkxx53vrcal0jk3nybsyl37jza8x"; depends=[]; }; keypress = derive { name="keypress"; version="1.0.0"; sha256="16msbanmbv2kf09qvl8bd9rf1vr7xgcjzjhzngyfyxv90va3k86b"; depends=[]; }; kfigr = derive { name="kfigr"; version="1.2"; sha256="0hmfh4a95883p1a63lnziw8l9f2g0fn0xzxzh36x9qd9nm7ypmkw"; depends=[knitr]; }; kimisc = derive { name="kimisc"; version="0.2-1"; sha256="1nbhw1q0p87w4z326wj5b4k0xdv0ybkgcc59b3cqbqhrdx8zsvql"; depends=[plyr]; }; kin_cohort = derive { name="kin.cohort"; version="0.6"; sha256="13gnjk58m5kya9wj87klwm6h7cdqi61ba6y0cg9k1hgbc1ajy3s8"; depends=[survival]; }; kineticF = derive { name="kineticF"; version="1.0"; sha256="1k54zikgva9fw9c4vhkc9b0kv8sq5pmc962s8wxr6qv97liv9p46"; depends=[circular lqmm MASS plotrix sp splancs]; }; kinfit = derive { name="kinfit"; version="1.1.14"; sha256="0gb43pghgllb9gzh8jzzpfmc46snv02ln4g3yqsdah3cyqnck0ih"; depends=[]; }; -kinship2 = derive { name="kinship2"; version="1.6.0"; sha256="06f544yk61i1xq0rm0r5gpzwfl6rvzyg7gz8z86bjyxg0z44h3vy"; depends=[Matrix quadprog]; }; +kinship2 = derive { name="kinship2"; version="1.6.4"; sha256="19r3y5as83nzk922hi4fkpp86gbqxdg1bgng798g1b073bp6m9yj"; depends=[Matrix quadprog]; }; kintone = derive { name="kintone"; version="0.1.1"; sha256="13c82vkapks9j2crrb4awnhl60ld8b1r7xmy9yv4zzch868kcl5g"; depends=[RCurl rjson]; }; kissmig = derive { name="kissmig"; version="1.0-3"; sha256="1pi1x3gdbqrhr1km1hqj15k8wyrgs697fnxgjgxga1irbn8bi482"; depends=[raster]; }; kitagawa = derive { name="kitagawa"; version="2.1-0"; sha256="1ddyd0rwwmdpbq823qass5dlp2lvi9d64wpl61ik6fghms2p9ryr"; depends=[kelvin]; }; @@ -4410,7 +4430,7 @@ lgtdl = derive { name="lgtdl"; version="1.1.3"; sha256="00lffc60aq1qjyy66nygaypd lhs = derive { name="lhs"; version="0.10"; sha256="1hc23g04b6nsg8xffkscwsq2mr725r6s296iqll887b3mnm3xaqz"; depends=[]; }; libamtrack = derive { name="libamtrack"; version="0.6.2"; sha256="1wmy3baqbmmzc4w1b3w2z3qvsi61khl6a6rlc22i58gnprmgzrph"; depends=[]; }; lifecontingencies = derive { name="lifecontingencies"; version="1.1.9"; sha256="1cl1jv0a9016vpqa5an3fh716hciyk7knbfg4gd7hvixg1y1avgd"; depends=[markovchain Rcpp]; }; -liftr = derive { name="liftr"; version="0.1"; sha256="0kmkyxp28n3ha1iic97bdd2czfmqbbn2dnjwffs29xjcs32m9z9s"; depends=[knitr rmarkdown yaml]; }; +liftr = derive { name="liftr"; version="0.2"; sha256="019q619fy7l81d68bk8pwf4x6073zzvhvngkw636k28mqi9qiphj"; depends=[knitr rmarkdown stringr yaml]; }; likeLTD = derive { name="likeLTD"; version="5.5.0"; sha256="111wdszkk2bdi9sz6gfih32kib0ig9bp4xlq6wl5r5zx3nrlj5zb"; depends=[DEoptim gdata ggplot2 gtools rtf]; }; likelihood = derive { name="likelihood"; version="1.7"; sha256="0q8lvwzlniijyzsznb3ys4mv1cqy7ibj9nc3wgyb4rf8676k4f8v"; depends=[nlme]; }; likelihoodAsy = derive { name="likelihoodAsy"; version="0.40"; sha256="1zgqs9pcsb45s414kqbhvsb9cxag0imla682981lqvrbli13p2kg"; depends=[alabama cond nleqslv pracma Rsolnp]; }; @@ -4524,6 +4544,7 @@ ltsk = derive { name="ltsk"; version="1.0.3"; sha256="17l4mwggd4s39l6x1b6gvwgd6g lubridate = derive { name="lubridate"; version="1.3.3"; sha256="1f07z3f90vbghsarwjzn2nj6qz8qyfkqalszx8cb5kliijdkwy8z"; depends=[memoise plyr stringr]; }; luca = derive { name="luca"; version="1.0-5"; sha256="1jiqwibkrgga4ahz0qgpfkvrsxjqc55i2nwnm60xddb8hpb6a6qx"; depends=[genetics survival]; }; lucid = derive { name="lucid"; version="1.3"; sha256="018vp4xibxr7aanffcvhmppsh7vjsjrqqc41iavyasjbamj3hyck"; depends=[nlme]; }; +lulcc = derive { name="lulcc"; version="1.0.0"; sha256="0a7j08211831hddnngm83lz3a8gr2bq5azadgsdv7cwabg79msk2"; depends=[lattice raster rasterVis ROCR]; }; lunar = derive { name="lunar"; version="0.1-04"; sha256="0nkzy6sf40hxkvsnkzmqxk4sfb3nk7ay4rjdnwf2zym30qax74kk"; depends=[]; }; lvm4net = derive { name="lvm4net"; version="0.2"; sha256="0al0answp3rngq69bl3ch6ylil22wdp1c047yi5gbga853p7db0c"; depends=[ellipse ergm igraph MASS network]; }; lxb = derive { name="lxb"; version="1.3"; sha256="0mvjk0s9bzvznjy0cxjsqv28f6jjzvr713b2346ym4cm0y4l3mir"; depends=[]; }; @@ -4554,12 +4575,12 @@ manifestoR = derive { name="manifestoR"; version="1.0-4"; sha256="0c908d35hja6fb manipulate = derive { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; }; mapDK = derive { name="mapDK"; version="0.3.0"; sha256="03ksg47caxx3y97p3nsflwpc7i788jw874cixr9gjz756avwkmwp"; depends=[ggplot2 stringi]; }; mapStats = derive { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; }; -mapdata = derive { name="mapdata"; version="2.2-4"; sha256="1x92nshzhfm9y0wx9m616f3663kfavdvfz8hm7xrywsj7pkd78gz"; depends=[maps]; }; +mapdata = derive { name="mapdata"; version="2.2-5"; sha256="0pl4k7lxmyg96h2i8mwdqgwq5ff1v08g54dig5zmqn9wi71y6nl9"; depends=[maps]; }; mapfit = derive { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; }; mapmisc = derive { name="mapmisc"; version="1.3.2"; sha256="1da2mqjwr4fb1gapd575fg2yjidddqqkra2ki9iqlkanh9jn4iwi"; depends=[raster sp]; }; mapplots = derive { name="mapplots"; version="1.5"; sha256="09sk78a0p8hlwhk3w2dwvpb0a6p7fqdxyskvz32p1lcav7y3jfrb"; depends=[]; }; -mapproj = derive { name="mapproj"; version="1.2-3"; sha256="0ssc47qpfpr8gvmwpsm9vn1j7fg0zzcs0cw7q73mjjswjx1vzwvj"; depends=[maps]; }; -maps = derive { name="maps"; version="2.3-10"; sha256="0jqima0c7v655bknps8dbdcpmw36nc3vaqnw142jkrcwrm4dzjy5"; depends=[]; }; +mapproj = derive { name="mapproj"; version="1.2-4"; sha256="1sywwzdikpnkzygb2jx9c67sgrykgbkm39dkf45clz3yylsib2ng"; depends=[maps]; }; +maps = derive { name="maps"; version="2.3-11"; sha256="0752dh646bngw726941p0xd3p9chxlg4mdyns3jc23h68w7da0kc"; depends=[]; }; maptools = derive { name="maptools"; version="0.8-36"; sha256="0064b9qqv7241298dswv5kkkqf6y2iyn7dhjcyvfkqn4kvc9g2m8"; depends=[foreign lattice sp]; }; maptpx = derive { name="maptpx"; version="1.9-2"; sha256="1i5djmjg0lsi7xlkbvn90njq1lbyi74zwc2nldisay4xsbgqg7fj"; depends=[slam]; }; maptree = derive { name="maptree"; version="1.4-7"; sha256="1k7v84wvy6wz6g0dyiwvd3lvf78rlfidk60ll4fz7chvr2nrqdp4"; depends=[cluster rpart]; }; @@ -4569,7 +4590,7 @@ marg = derive { name="marg"; version="1.2-2"; sha256="0j08zzcrj8nqsargi6xi50gy9p markdown = derive { name="markdown"; version="0.7.7"; sha256="00j1hlib3il50azs2vlcyhi0bjpx1r50mxr9w9dl5g1bwjjc71hb"; depends=[mime]; }; marked = derive { name="marked"; version="1.1.8"; sha256="1xsg0iy8mcy9b98bxmjr3y413xwblbhks3fcydbvjnry0k03gd5i"; depends=[coda expm ggplot2 lme4 Matrix numDeriv optimx plyr R2admb Rcpp truncnorm]; }; markophylo = derive { name="markophylo"; version="1.0.1"; sha256="17lzmjb34ky0y5hjijfxhxnry0b3vrmfs0q9iyd293wngmjs6r0s"; depends=[Rcpp RcppArmadillo]; }; -markovchain = derive { name="markovchain"; version="0.3.1"; sha256="067rib4sxcqq8wwf139x6k4b37caw1wslv0lbss9nzwhv50bxgvd"; depends=[expm igraph matlab Matrix MultinomialCI Rcpp RcppArmadillo RcppParallel]; }; +markovchain = derive { name="markovchain"; version="0.4"; sha256="0pg51inyp9b62dnw3855hvvcn1svapdxc5wfgf2zz9ysyzvcipfy"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; marl = derive { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; }; marmap = derive { name="marmap"; version="0.9.2"; sha256="1csi6v6z2p3nmyqwy8bmbj036693rzmxrc317g0a45gsqxggp3n4"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf plotrix raster reshape2 RSQLite shape sp]; }; marqLevAlg = derive { name="marqLevAlg"; version="1.1"; sha256="1wmqi68g0flrlmj87vwgvyxap0miss0n42qiiw7ypyj4jw9kwm8j"; depends=[]; }; @@ -4606,7 +4627,7 @@ mclogit = derive { name="mclogit"; version="0.3-1"; sha256="0zyms6v9qjh6a5ccahfa mclust = derive { name="mclust"; version="5.0.2"; sha256="1ilhgiigrnvw5l85vk54xdvlirqhp5wb404i0mh2jyzccr9pjml5"; depends=[]; }; mcmc = derive { name="mcmc"; version="0.9-4"; sha256="1ws80j64df8inzz0a6k8r51wf44zwjnpvp591pxwah2jbi6j6kna"; depends=[]; }; mcmcplots = derive { name="mcmcplots"; version="0.4.2"; sha256="0ws2la6ln016l98c1rzf137jzhzx82l4c49p19yihrmrpfrhr26l"; depends=[coda colorspace denstrip sfsmisc]; }; -mcmcse = derive { name="mcmcse"; version="1.0-1"; sha256="1jn5hl6aw83qmwccyfmcsvcymx9cp4d3qnfzzqvlw22x26rx88r6"; depends=[]; }; +mcmcse = derive { name="mcmcse"; version="1.1-1"; sha256="0swbdp444ixg0lda8f0az612573md53vj4xg156zdb612gf8x4dv"; depends=[ellipse Rcpp RcppArmadillo]; }; mco = derive { name="mco"; version="1.0-15.1"; sha256="14y10zprpiflqsv5c979fsc2brgxay69kcwm7y7s3gziq74fn4rw"; depends=[]; }; mcprofile = derive { name="mcprofile"; version="0.2-1"; sha256="0q1d236mcmgp5p5gl474myp1zz8cbxffd0kvsd8338jijalj05p0"; depends=[ggplot2 mvtnorm quadprog]; }; mcr = derive { name="mcr"; version="1.2.1"; sha256="0237w41xichd418ax9xviq4wxbcc6c0cgr5gvzkca67nnqgc4jaz"; depends=[]; }; @@ -4694,7 +4715,7 @@ minpack_lm = derive { name="minpack.lm"; version="1.1-8"; sha256="0nvsxqwg3k9k3d minqa = derive { name="minqa"; version="1.2.4"; sha256="036drja6xz7awja9iwb76x91415p26fb0jmg7y7v0p65m6j978fg"; depends=[Rcpp]; }; minque = derive { name="minque"; version="1.1"; sha256="1hx4j38213hs8lssf9kj5s423imk7dzv60mdbzrpbp7la7jk2n57"; depends=[klaR Matrix]; }; minxent = derive { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; }; -mipfp = derive { name="mipfp"; version="2.0"; sha256="1sh33lgvq31nk8vkl9p195v4z3whv2c1fc7bnhc8wxgglm6vc126"; depends=[cmm numDeriv Rsolnp]; }; +mipfp = derive { name="mipfp"; version="2.2"; sha256="02jy32kbrfjb38q1jwm07yp0irsbq5hk3r3bsqrvwm6vlg6rxalz"; depends=[cmm numDeriv Rsolnp]; }; mirt = derive { name="mirt"; version="1.10"; sha256="0bylba0z8g9kx3idfpzf3qbw7pgjvpd8d1vx930nr02vhv3c3cms"; depends=[GPArotation lattice mgcv numDeriv Rcpp sfsmisc]; }; mirtCAT = derive { name="mirtCAT"; version="0.5"; sha256="0lv4dxpby3izmh3avl70i0iiaj8rz1fpb666cwga5590ks7rq4lr"; depends=[lattice markdown mirt Rcpp RcppArmadillo shiny]; }; misc3d = derive { name="misc3d"; version="0.8-4"; sha256="0qjzpw3h09qi2gfz52b7nhzd95p7yyxsd03fldc9wzzn6wi3vpkm"; depends=[]; }; @@ -4710,8 +4731,8 @@ mistral = derive { name="mistral"; version="1.1-1"; sha256="19zkc5ddjzw17y70x3l6 mitml = derive { name="mitml"; version="0.2-3"; sha256="063nc32sgzg2q85fbxmxqch7yyf0fhl8rng83mnqbr9fjy1gxdnm"; depends=[haven pan]; }; mitools = derive { name="mitools"; version="2.3"; sha256="0w76zcl8mfgd7d4njhh0k473hagf9ndcadnnjd35c94ym98jja33"; depends=[]; }; mix = derive { name="mix"; version="1.0-9"; sha256="08729y6ih3yixcc4a6m8fszg6pjc0s02iq47339b9gj16p82b74z"; depends=[]; }; -mixAK = derive { name="mixAK"; version="4.1-1"; sha256="0y9p9ixa5kps48snvkmyj7b8lmgb8cqrrzp0idh5g06kgriqcn1k"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; -mixOmics = derive { name="mixOmics"; version="5.0-4"; sha256="020cy0x7qf6x7lb1aqfr6qflf08k2phnygcjr7lq4z8q9v502qyh"; depends=[igraph lattice MASS pheatmap RGCCA rgl]; }; +mixAK = derive { name="mixAK"; version="4.2"; sha256="0z96ddlvkpr4y2chi929ik81snsr0f03a0k4cnh0q1lx0lr51p1z"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; +mixOmics = derive { name="mixOmics"; version="5.1.1"; sha256="1kkpww3x782h3zklfspzc8dkr40qnk4wrp0yqkx803svynsdr83a"; depends=[ellipse ggplot2 igraph lattice MASS pheatmap rgl]; }; mixPHM = derive { name="mixPHM"; version="0.7-2"; sha256="1wvkdb9zj2j8dpppnyins05rg877zbydqsl3qaan62wznkknxcac"; depends=[lattice survival]; }; mixRasch = derive { name="mixRasch"; version="1.1"; sha256="1r067pv7b54y1bz8p496wxv4by96dxfi2n1c99gziqf5ramx3qzp"; depends=[]; }; mixcat = derive { name="mixcat"; version="1.0-3"; sha256="0xszngygd3yj61pvv6jrrb5j0sxgpxzhlic69xrd5mv5iyw0cmxd"; depends=[statmod]; }; @@ -4720,7 +4741,6 @@ mixedMem = derive { name="mixedMem"; version="1.0.2"; sha256="1nlnlww2xbmlifcp9l mixer = derive { name="mixer"; version="1.8"; sha256="1r831jha7qrxibw5m3nc3l6r887ihzxzsj65yjnbl5cf5b8y19bb"; depends=[]; }; mixexp = derive { name="mixexp"; version="1.2.1"; sha256="0yjsngr2akj2hhl1hav2kkp8w0g4775qvnbzypa3c1fmx8kf1xvw"; depends=[daewr gdata lattice]; }; mixlm = derive { name="mixlm"; version="1.0.9.2"; sha256="1rh2sj5h9h4rmv7vqa87jbbln1mz6h0hb3gv3g99zcmazbd18k75"; depends=[car leaps lme4 multcomp pls pracma]; }; -mixlow = derive { name="mixlow"; version="1.0.1"; sha256="12vnp3gl3ykxzgvc4bwhi4flmc1sl2y77yi0zi4by17q93a49akm"; depends=[nlme]; }; mixor = derive { name="mixor"; version="1.0.2"; sha256="1xkwgk4dvjbpqvvbrb8yb88iz4nkv7sykxaygjq7zfcdrdivxz6n"; depends=[]; }; mixreg = derive { name="mixreg"; version="0.0-5"; sha256="0wsb1z98ymhshw9nhsvlszsanflxv3alwpdsw8lr3v62bkwka8zr"; depends=[]; }; mixsep = derive { name="mixsep"; version="0.2.1-2"; sha256="1ywwag02wbx3pkd7h0j9aab44bdmwsaaz0p2pcqn1fs3cpw35wa2"; depends=[MASS RODBC tcltk2]; }; @@ -4814,7 +4834,7 @@ mppa = derive { name="mppa"; version="1.0"; sha256="06v6vq2nfh4b407x2gyvcp5wbdrc mpt = derive { name="mpt"; version="0.5-1"; sha256="1b6n7kivkj4ndcc27jmznx9dh40kvjjk7hfxh21kmnknl5ap4ffb"; depends=[]; }; mra = derive { name="mra"; version="2.16.4"; sha256="134fw4bv34bycgia58z238acj7kb8jkw51pjfa2cwprrgsjdpf5g"; depends=[]; }; mratios = derive { name="mratios"; version="1.3.17"; sha256="0a2pn4234ri5likaqbxgkw8xqmwchr6fak3nninral0yzd4rcal5"; depends=[mvtnorm]; }; -mrds = derive { name="mrds"; version="2.1.12"; sha256="1v7lv3ssg9m8bx2gskzf31lkg3sxsdkvknrdx9aawdh3mzxwcys7"; depends=[mgcv optimx Rsolnp]; }; +mrds = derive { name="mrds"; version="2.1.14"; sha256="0lvr9zqyi45a100w31k228b03plna24rzgamsvfa34inyd8q4y9m"; depends=[mgcv numDeriv optimx Rsolnp]; }; mreg = derive { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; }; mri = derive { name="mri"; version="0.1.1"; sha256="07lqr9fv0nqd626jpqa6x1qxf85r1j4r5brv760dll1p2kl060gw"; depends=[]; }; mritc = derive { name="mritc"; version="0.5-0"; sha256="1344x7gc7wvmcqp0sydppavavvps5v7bs0dza2fr8rz3sn4as8sa"; depends=[lattice misc3d oro_nifti]; }; @@ -4840,7 +4860,7 @@ muStat = derive { name="muStat"; version="1.7.0"; sha256="18727xj9i9hcnpdfnl1b9w muhaz = derive { name="muhaz"; version="1.2.6"; sha256="1b7gzygbb5qss0sf9kdwp7rnj8iz58yq9267n9ffqsl9gwiwa1b7"; depends=[survival]; }; muir = derive { name="muir"; version="0.1.0"; sha256="0h3qaqf549v40ms7c851sspaxzidmdpcj89ycdmfp94b2q3bmz98"; depends=[DiagrammeR dplyr stringr]; }; multcomp = derive { name="multcomp"; version="1.4-1"; sha256="07zvpdiphn9ndvhvblnd2li2a70j8igscd685s5mslbx5rqppv3k"; depends=[codetools mvtnorm sandwich survival TH_data]; }; -multcompView = derive { name="multcompView"; version="0.1-5"; sha256="0vfgvqxqgxyifkqs3r5xxj7rfn8lfmby6wyyiqa5jv01073xchib"; depends=[]; }; +multcompView = derive { name="multcompView"; version="0.1-7"; sha256="18gfn3dxgfzjs13l039l2xdkkf10fapjjhxzjx76k0iac06i1p7i"; depends=[]; }; multgee = derive { name="multgee"; version="1.5.1"; sha256="1ycbbri26hahbi3q4mrsyhrh9bwj89dyv6gvrpx58ghrlsnakjy1"; depends=[gnm VGAM]; }; multiAssetOptions = derive { name="multiAssetOptions"; version="0.1-1"; sha256="1kb4qxyl9shvrpqfxq26lhh3sssmyjcnhhcl6gcbb0s86snh9ms9"; depends=[Matrix]; }; multiDimBio = derive { name="multiDimBio"; version="0.3.3"; sha256="1aj6yam31mr0abjb6m5m85r1w71snha4s7h4ikyw66sc73xkmb9m"; depends=[ggplot2 lme4 MASS misc3d pcaMethods RColorBrewer]; }; @@ -4905,7 +4925,7 @@ mvtsplot = derive { name="mvtsplot"; version="1.0-1"; sha256="0g5grrha77rsnkfasw mwa = derive { name="mwa"; version="0.4.1"; sha256="0bd4i1zzwmcsrm2bg14f528yav5hb6qxcd7x4i5rwdcx1hlx27bw"; depends=[cem MASS rJava]; }; mwaved = derive { name="mwaved"; version="1.1.1"; sha256="1hn6nbwawkizv9v4k98hm5lz94yha2fng76x0r9f804whmv1pz36"; depends=[Rcpp shiny]; }; mxkssd = derive { name="mxkssd"; version="1.1"; sha256="0m9763dqrk8qkrvp18bsv96jv0xhc2m8sbxdk6x3w6kdjcl663p2"; depends=[]; }; -myTAI = derive { name="myTAI"; version="0.2.1"; sha256="0c4wx9x9v3hsc8h3wi0di5inr7r5lls6l0ljk42ry5i6l639n833"; depends=[doParallel dplyr edgeR fitdistrplus foreach nortest RColorBrewer Rcpp taxize]; }; +myTAI = derive { name="myTAI"; version="0.3.0"; sha256="0j0wdc7p98h14l51f0mgl6k7ns8fb93y12z7mjik4dpakzsanl68"; depends=[doParallel dplyr edgeR fitdistrplus foreach ggplot2 nortest RColorBrewer Rcpp reshape2 taxize]; }; mycobacrvR = derive { name="mycobacrvR"; version="1.0"; sha256="1xd9ackzdd8db6bayza0bg4n256mi9rdqih0cdc0nl212c3iz75g"; depends=[]; }; mycor = derive { name="mycor"; version="0.1"; sha256="1ibcxl9v2d2mxpwad0rv5dw1j645rrg05f4aqvyhyd40hz9823mr"; depends=[lattice]; }; myepisodes = derive { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; }; @@ -4982,9 +5002,9 @@ nloptr = derive { name="nloptr"; version="1.0.4"; sha256="1cypz91z28vhvwq2rzqjrb nlreg = derive { name="nlreg"; version="1.2-2"; sha256="1pi7057ldiqb12kw334iavb4i92ziy1kv4amcc4d1nfsjam03jxv"; depends=[statmod survival]; }; nls2 = derive { name="nls2"; version="0.2"; sha256="0k46i865p6jk0jchy03jiq131pc20h9crn3hygzy305rdnqvaccq"; depends=[proto]; }; nlsMicrobio = derive { name="nlsMicrobio"; version="0.0-1"; sha256="0676n78265z00dacmq593c9l2239ii574djm9s7i7w8jk1kdhzx2"; depends=[nlstools]; }; -nlsem = derive { name="nlsem"; version="0.3"; sha256="1lpp6f6nby1rzxv7hrqnm4qbwj406g9ls9jmidb8rqgy177sk4w6"; depends=[gaussquad mvtnorm nlme]; }; +nlsem = derive { name="nlsem"; version="0.4.1"; sha256="11i1dma87bx55dhqb8j9ccc7cg3qc9ppmg6g0a61xdkw2nlg42vm"; depends=[gaussquad mvtnorm nlme]; }; nlsmsn = derive { name="nlsmsn"; version="0.0-4"; sha256="1gvpy8rq020l64bdw6n7kv354l7gwa2rgxarm6k0mqq7z21fxf58"; depends=[]; }; -nlstools = derive { name="nlstools"; version="1.0-1"; sha256="00m2x587gvrbgs7wdkz2n54ylp0rnrs76rb6xmi3pf9xlbmnplr2"; depends=[]; }; +nlstools = derive { name="nlstools"; version="1.0-2"; sha256="0mjn1j9fqqgr3qgdr0ki4lfbd0yrkanvya4y2483q3wklqa6qvjc"; depends=[]; }; nlt = derive { name="nlt"; version="2.1-3"; sha256="1j0xrrbr1hvfda8rvnc17lj96m6cz24faxvwn68ilf7j1ab2lkgn"; depends=[adlift EbayesThresh]; }; nlts = derive { name="nlts"; version="0.2-0"; sha256="14kvzc1p4anj9f7pg005pcbmc4k0917r49pvqys9a0a51ira67vb"; depends=[acepack locfit]; }; nmcdr = derive { name="nmcdr"; version="0.3.0"; sha256="1557pdv7mqdjwpm6d9zw3zfbm1s8ai3rasd66nigscmlq102w745"; depends=[CDFt]; }; @@ -5009,7 +5029,7 @@ norm = derive { name="norm"; version="1.0-9.5"; sha256="01j1h412yfjx5r4dd0w8rhlf normalp = derive { name="normalp"; version="0.7.0"; sha256="1s12x2qln3s4bbqsm4p3cq4g6461z73r858g6ym1awamhbmncnrl"; depends=[]; }; normtest = derive { name="normtest"; version="1.1"; sha256="073r2mwfs6c4vqh8921nlyygl0f20nhv997s0iwf00d3jckkc4pp"; depends=[]; }; normwhn_test = derive { name="normwhn.test"; version="1.0"; sha256="1kr45bfydk40hgdg24i2f28cdaw65hg9gmsgv4lsvvr2m3r74vi6"; depends=[]; }; -nortest = derive { name="nortest"; version="1.0-3"; sha256="0kih1r703hjw2vha2hx13vm3fvbyra7v229khgv3hxxfppb7jis8"; depends=[]; }; +nortest = derive { name="nortest"; version="1.0-4"; sha256="17r0wpz72z9312c70nwi1i1kp1v9fm1h6jg7q5cx1mc1h420m1d3"; depends=[]; }; nose = derive { name="nose"; version="1.0"; sha256="17l78vmfqc22inq6zaqpnk2m91wp0nfjbbwfcpfqykf8lk9ipqna"; depends=[]; }; notifyR = derive { name="notifyR"; version="1.02"; sha256="0jx76ic5r1crcgg0n0yqnka0gwniflfxakh838a98j9wb11wi6h5"; depends=[RCurl rjson]; }; novelist = derive { name="novelist"; version="1.0"; sha256="0wzx0vkqvl9sfhbbrzylsxhm3qmjj5w8sy5w6gvd104fn84d49yk"; depends=[]; }; @@ -5022,7 +5042,7 @@ npbr = derive { name="npbr"; version="1.2"; sha256="0l6r9cwrhbi37p8prrjcli7rpvlx npcp = derive { name="npcp"; version="0.1-6"; sha256="1ki9q49nyw21c6x3iwpd8aa152jc30idl0xx8f803j72yl21j47c"; depends=[]; }; npde = derive { name="npde"; version="2.0"; sha256="1cp4k7jvsw9rc6rrck902nqqjaf2c1nxjic7i9r3fd6yca1lgqb9"; depends=[mclust]; }; nplplot = derive { name="nplplot"; version="4.5"; sha256="1dpbs0jb34gv0zj528357z1j2pwahjbp04rm7jir6qk0jhyaxxgh"; depends=[]; }; -nplr = derive { name="nplr"; version="0.1-3"; sha256="1g7qr88wrgn5j7z0x1csyk7mfagngn282bd42g820z7yg42ija1y"; depends=[]; }; +nplr = derive { name="nplr"; version="0.1-4"; sha256="03yq8f2bfdyi21d8kqcca0byjrw9a7pgp0c6fwpk1lnniaabzn2d"; depends=[]; }; npmlreg = derive { name="npmlreg"; version="0.46-1"; sha256="1gddl6diw8ix8vz7n1r4ps9cjx3q00mafpapskjk7pcz69m6hfv1"; depends=[statmod]; }; npmv = derive { name="npmv"; version="2.2"; sha256="1aqlx1y3bxbqp13q0vajwffj8srb6s04d5r2h08m9fk5hhp9l3jf"; depends=[Formula]; }; nppbib = derive { name="nppbib"; version="1.0-0"; sha256="075jb13zckkh66jwdmdlq4d2drjcc3lkj26px3w79b91223yymf2"; depends=[]; }; @@ -5062,7 +5082,7 @@ odeintr = derive { name="odeintr"; version="1.3"; sha256="12y5hr6f7bj3aqj4gd0hlj odfWeave = derive { name="odfWeave"; version="0.8.4"; sha256="1rp9j3snkkp0fqmkr6h6pxqd4cxkdfajgh4vlhpz56gr2l9j48q5"; depends=[lattice XML]; }; odfWeave_survey = derive { name="odfWeave.survey"; version="1.0"; sha256="0cz7dxh1x4aflvfrdzhi5j64ma5s19ma8fk9q2m086j11a1dw3jn"; depends=[odfWeave survey]; }; oem = derive { name="oem"; version="1.02.1"; sha256="0z9k0jhpp5dayyin6v8p26rgl8s983hnpsk195c9z458i7nbmrpd"; depends=[Rcpp RcppArmadillo]; }; -oglmx = derive { name="oglmx"; version="1.0.2"; sha256="1yln1ysk19mxnb0aq74xgqj0qqipqg3qbczyhdygakjd4v4ndvhg"; depends=[maxLik]; }; +oglmx = derive { name="oglmx"; version="1.0.3"; sha256="01r0j7d2l4pf61x2q4pa6pnkv2yzsk2jb62cvh0jz2rhkpvqjniq"; depends=[maxLik]; }; okmesonet = derive { name="okmesonet"; version="0.1.5"; sha256="1kzyzmg702ayzphn9jsk64m51mlnz37ylxiwq5gsr23vaiida680"; depends=[plyr]; }; omd = derive { name="omd"; version="1.0"; sha256="0s1wcgivqapbkzjammga8m12gqgw113729kzfzgn02nsfzmsxspv"; depends=[]; }; oncomodel = derive { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; }; @@ -5093,7 +5113,7 @@ optimbase = derive { name="optimbase"; version="1.0-9"; sha256="0ivz24kf3yacgq5b optimsimplex = derive { name="optimsimplex"; version="1.0-5"; sha256="1aiq0w2zlra3k6x4hf2rglb6bj8w25yc8djnpgm508kkrbv3cc17"; depends=[optimbase]; }; optimx = derive { name="optimx"; version="2013.8.7"; sha256="0pbd7s02isj24npi4m1m1f008xqwzvwp3kn472wz8nmy4zrid30s"; depends=[BB dfoptim minqa numDeriv Rcgmin Rvmmin setRNG svUnit ucminf]; }; optiscale = derive { name="optiscale"; version="1.1"; sha256="1c263w9df66m7lgvzpdfm2zwx9nj8wcdpgh5gijachr2dzffmrp2"; depends=[lattice]; }; -optmatch = derive { name="optmatch"; version="0.9-3"; sha256="16mhrhdpyqrj1g24mwc3fl0qyqq1kna8z6cj239fpbjhqb1mirjb"; depends=[digest]; }; +optmatch = derive { name="optmatch"; version="0.9-5"; sha256="1dgsxd6w2fgy07yzihbrg30ya0lmy146m70cfaaxr6pnr8d0rszr"; depends=[digest Rcpp RItools survival]; }; optparse = derive { name="optparse"; version="1.3.0"; sha256="02sy28imvssr49pngdbg9qbx1h1fyjl11j7nql55m10a7cdzhwd4"; depends=[getopt]; }; optpart = derive { name="optpart"; version="2.1-1"; sha256="0m2nsrynqbw9sj7cp7c37grx9g20dld2f26g0xzbj16wz7whgp02"; depends=[cluster labdsv MASS plotrix]; }; optrees = derive { name="optrees"; version="1.0"; sha256="1zqpjii8dsfs98n58qpif81ckvyxkr0661svhlbgzi19xb2vszqs"; depends=[igraph]; }; @@ -5192,7 +5212,7 @@ partialOR = derive { name="partialOR"; version="0.9"; sha256="02vbvln8lswysaafpx partitionMap = derive { name="partitionMap"; version="0.5"; sha256="0pi066xaaq0iqr0d7cncdzjd7bacmgrivc4qvhqx0y7q1vifrdjm"; depends=[randomForest]; }; partitionMetric = derive { name="partitionMetric"; version="1.1"; sha256="1wry9d3s814yp79ayab7rzf8z5l2mwpgnrc5j7d2sac24vp4pd48"; depends=[]; }; partitions = derive { name="partitions"; version="1.9-15"; sha256="0jgpknm4zah50w9i3fbq2f1whm4hywm2j72vxc3ignx1snx2z0gs"; depends=[gmp polynom]; }; -partools = derive { name="partools"; version="1.1.1"; sha256="1z6grb6iag3r32438la7q06jx2fvdzlcjng3sl96lhvwj4rwi17r"; depends=[]; }; +partools = derive { name="partools"; version="1.1.3"; sha256="07bvhs6a53cm0gvmxbibg8rhzvjxrhjgl65ib348a4q43pgap2v1"; depends=[]; }; partsm = derive { name="partsm"; version="1.1-2"; sha256="0cv3lgkdkn97bc85iwlv9w5pmqwwwsgb717zxnbgb5mzf4xn3f3g"; depends=[]; }; party = derive { name="party"; version="1.0-22"; sha256="16wk9nsjjh8f464xx2izyymqwl89aygiyqir7h1kawm7flw9mrmv"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; partykit = derive { name="partykit"; version="1.0-2"; sha256="1v1ykha642cgrj8hwj8gmz3860nmr1brgdjgal732dprzm3lg4hl"; depends=[survival]; }; @@ -5244,10 +5264,10 @@ pear = derive { name="pear"; version="1.2"; sha256="1ixmyzm72s18qrfv2m8xzh5503k1 pearson7 = derive { name="pearson7"; version="1.0-1"; sha256="0li32my02gv5yaf4q1w48pjbmij2njkpd15135n9mzjc5ibvf5kh"; depends=[]; }; pec = derive { name="pec"; version="2.4.4"; sha256="110v8jb6l79prbkm8vp1qgrdks598q3ygmqj2yyv1d5plmsj9dh6"; depends=[foreach prodlim rms survival]; }; pedantics = derive { name="pedantics"; version="1.5"; sha256="0m5jxzkf1pf657q2klv6idnywg18ki962666nj7sfyl4rq06xhsi"; depends=[kinship2 MasterBayes MCMCglmm]; }; -pedgene = derive { name="pedgene"; version="2.1"; sha256="0nmp1s0i5b4h45p3f4rvvixjz8sgv56as3c85rvv3a8xwfd1gcxq"; depends=[CompQuadForm kinship2 Matrix survey]; }; +pedgene = derive { name="pedgene"; version="2.7"; sha256="1qgk8a601ynvbk94zl81a94pa4iw3l3bwjf19dlgkfs30nkq5p9x"; depends=[CompQuadForm kinship2 Matrix survey]; }; pedigree = derive { name="pedigree"; version="1.4"; sha256="1dqfvzcl6f15n4d4anjkd0h8vwsbxjg1lmlj33px8rpp3y8xzdgw"; depends=[HaploSim Matrix reshape]; }; pedigreemm = derive { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; }; -pedometrics = derive { name="pedometrics"; version="0.6-2"; sha256="137685gyd7k9vpjnsy6h280cdbl15bchrizfnalnz6nizi0q85lj"; depends=[car gstat Hmisc lattice latticeExtra MASS moments pbapply plyr Rcpp sp spsurvey xtable]; }; +pedometrics = derive { name="pedometrics"; version="0.6-3"; sha256="00jv9v3hrvh9jfl5vzkjh7frym9m6d9di4zv5ybwww2ba9rq2xaf"; depends=[lattice latticeExtra Rcpp]; }; pegas = derive { name="pegas"; version="0.8-1"; sha256="116r709qp9hcvmvfn6xsis13284nl429sfc9d91p1c7fy8fl46q5"; depends=[adegenet ape]; }; penDvine = derive { name="penDvine"; version="0.2.4"; sha256="0znpvsr7zy2wgy7znha1qiajcrz1z6mypi3f5hpims33z7npa7dl"; depends=[doParallel fda foreach lattice latticeExtra Matrix quadprog TSP]; }; penMSM = derive { name="penMSM"; version="0.99"; sha256="1xdcxnagvjdpgnfa5914gb41v5y4lsvh63lbz1d2l8bl9mpff3lm"; depends=[Rcpp]; }; @@ -5291,8 +5311,8 @@ phenology = derive { name="phenology"; version="4.2.4"; sha256="1074sr1p3bjz4f2z phia = derive { name="phia"; version="0.2-0"; sha256="1v2znss1snqrn3bpd0513jmw0x39p9vpwdc60klx725yrr2cfznw"; depends=[car Matrix]; }; phmm = derive { name="phmm"; version="0.7-5"; sha256="0dil0ha199yh85j1skwfdl0v02vxdmb0xcc1jdbayjr5jrn9m1zk"; depends=[lattice Matrix survival]; }; phonR = derive { name="phonR"; version="1.0-3"; sha256="09wzsq92jkxy6cd89czshpj1hsp56v9jbgqr5a06rm6bv3spa31i"; depends=[deldir plotrix splancs]; }; -phonTools = derive { name="phonTools"; version="0.2-2.0"; sha256="1wd1a5506p3ny6vi9pq6yg9gbz082fxw4l3cxsplkdpqgkhryrww"; depends=[]; }; -phonenumber = derive { name="phonenumber"; version="0.1.0"; sha256="0nyax7nnqr2wb0g3m0a0xw7x7cinqb98wq8vrrrssk5h1sdiapgr"; depends=[]; }; +phonTools = derive { name="phonTools"; version="0.2-2.1"; sha256="01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"; depends=[]; }; +phonenumber = derive { name="phonenumber"; version="0.2.0"; sha256="0dsdf87lys52pb3sc1z21fbqswrz5n89pcgxp9fak9flb9b51jky"; depends=[]; }; phreeqc = derive { name="phreeqc"; version="1.0-9102"; sha256="09vwqd4mf64l76vgg32vm9vkc8ra6cls9nvrp3ckkj9l2fwcnbzf"; depends=[]; }; phtt = derive { name="phtt"; version="3.1.2"; sha256="1fvvx5jilq5dlgh3qlfsjxr8jizy4k34a1g3lknfkmvn713ycp7v"; depends=[pspline]; }; phyclust = derive { name="phyclust"; version="0.1-15"; sha256="1j643k0mjmswsvp9jyiawkjf2qhfrw6xf4s2viqv987zxif2kd7z"; depends=[ape]; }; @@ -5317,6 +5337,7 @@ pingr = derive { name="pingr"; version="1.1.0"; sha256="0j03qcsyckv3zh2v4m8wz8ky pipe_design = derive { name="pipe.design"; version="0.3"; sha256="1idgy7s6fnydcda51yj1rjil2pd1r2y6g0m5dmn8sw7wmaq2n3h6"; depends=[ggplot2 gtools]; }; pipeR = derive { name="pipeR"; version="0.6.0.6"; sha256="1d7vmccvh5ir26cv26mk0ay69rqmwmp0mgwjal9avfn9vrxq1fq3"; depends=[]; }; pitchRx = derive { name="pitchRx"; version="1.7"; sha256="0mx948bahw0zr0915hz9lcws7iq2l0ikgx4gjnnfhhpiii86xs57"; depends=[ggplot2 hexbin MASS mgcv plyr XML2R]; }; +pixiedust = derive { name="pixiedust"; version="0.1.1"; sha256="1vzkv9hs4vxamrn8prn0plhvqfdgy4lq6vk4sm8il5w6qyxzbadq"; depends=[ArgumentCheck broom dplyr knitr lazyWeave magrittr tidyr]; }; pixmap = derive { name="pixmap"; version="0.4-11"; sha256="04klxp6jndw1bp6z40v20fbmdmdpfca2g0czmmmgbkark9s1183g"; depends=[]; }; pkgKitten = derive { name="pkgKitten"; version="0.1.3"; sha256="1f7jkriib1f19mc5mdrymg5xzdcyclfvh1220agy4lpyprxgza0f"; depends=[]; }; pkgconfig = derive { name="pkgconfig"; version="2.0.0"; sha256="1wdi86qyaxq1mwkr3nrax3ab7hhj2gp1lbsyqnbcc9vzg230nh0r"; depends=[]; }; @@ -5343,7 +5364,7 @@ plotKML = derive { name="plotKML"; version="0.5-3"; sha256="1s33a3lq8zi11hzqcvkc plotMCMC = derive { name="plotMCMC"; version="2.0-0"; sha256="0i4kcx6cpqjd6i16w3i8s34siw44qigca2jbk98b9ligbi65qnqb"; depends=[coda gplots lattice]; }; plotROC = derive { name="plotROC"; version="1.3.3"; sha256="090fpj3b5vp0r2zrn38yxiy205mk9kx1fpwp0g8rl4bsa88v4c9y"; depends=[ggplot2 gridSVG shiny]; }; plotSEMM = derive { name="plotSEMM"; version="2.0"; sha256="0n30m1nz9fnilbgxg5jcmx2bsscdvz5mkjkyrgx7yr3alazkaimd"; depends=[MplusAutomation plotrix plyr Rcpp shiny]; }; -plotmo = derive { name="plotmo"; version="3.1.3"; sha256="0jdam773azxi5pv2ix4gc0zl3xji0rdlb7v5m51z1j0l93z50mk6"; depends=[plotrix TeachingDemos]; }; +plotmo = derive { name="plotmo"; version="3.1.4"; sha256="0b12w6sg317vgmhyn4gh9jcnyps1pyqnh5ai15y1dfajsf2zjhca"; depends=[plotrix TeachingDemos]; }; plotpc = derive { name="plotpc"; version="1.0.3"; sha256="0dw9k702a67c2k77dl4k2747lhsr84x41qrgj5mp9jnyfq6naciq"; depends=[]; }; plotrix = derive { name="plotrix"; version="3.5-12"; sha256="13gffp7zp46wal83609652x48i63zb5i20x6ycmgc97l4nanhrfi"; depends=[]; }; pls = derive { name="pls"; version="2.4-3"; sha256="114ka4766x8fx0zvvr7cylky1jsy542nj6s7sb2dwv8zjhbclkhn"; depends=[]; }; @@ -5364,8 +5385,8 @@ pmcgd = derive { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x pmclust = derive { name="pmclust"; version="0.1-6"; sha256="05zjx4psvk5zjmr0iwwwig990g6h04ajn5wi0xi8bqv046r47q3h"; depends=[MASS pbdMPI rlecuyer]; }; pmg = derive { name="pmg"; version="0.9-43"; sha256="0i7d50m4w7p8ipyx2d3qmc54aiqvw0ls8igkk8s1xc7k8ympfqi6"; depends=[foreign gWidgets gWidgetsRGtk2 lattice MASS proto]; }; pmlr = derive { name="pmlr"; version="1.0"; sha256="1z3hbw4wabpai1q8kbn77nzxqziag8y04cidlfiw7z969s4pkmgl"; depends=[]; }; -pmml = derive { name="pmml"; version="1.4.2"; sha256="0588sph67zs58knf4g3fd7c84i2yag81igr882jgbaxhfhxrpk6n"; depends=[survival XML]; }; -pmmlTransformations = derive { name="pmmlTransformations"; version="1.2.2"; sha256="1p31lakhqwk0qhb565j2sjcfsjsx0i5v8kj8779ryjyvy7717m6m"; depends=[]; }; +pmml = derive { name="pmml"; version="1.5.0"; sha256="192jffh9xb7zfvx4crpynrbdrx1fpiq303c2xz1wjqnq7wjmb3qw"; depends=[survival XML]; }; +pmmlTransformations = derive { name="pmmlTransformations"; version="1.3.0"; sha256="17dhgpldwadsvm25p8xwqsamcn1ypsqdijy2jia048qqmsy4ky86"; depends=[]; }; pmr = derive { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; pnf = derive { name="pnf"; version="0.1.1"; sha256="0kasq27dnjwqzlzybc8m3wv9jwyag6z38ayv88msa7lxcnibr34i"; depends=[]; }; png = derive { name="png"; version="0.1-7"; sha256="0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"; depends=[]; }; @@ -5511,6 +5532,7 @@ pvclass = derive { name="pvclass"; version="1.2"; sha256="099lk0x24h7g77lpr22mzp pvclust = derive { name="pvclust"; version="1.3-2"; sha256="0w9cxr0bc591icbyn8239f76ypb2nwv9fa5b1ix05wh55d1h0rgc"; depends=[]; }; pvrank = derive { name="pvrank"; version="1.0"; sha256="0kvy0b1x7q23pjw2ckyqzyh3ihqnbrd067v85l9rvf0pxyycqyhx"; depends=[Rmpfr]; }; pvsR = derive { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; }; +pweight = derive { name="pweight"; version="0.0.1"; sha256="0pxxfrap1bmnhbfbmkddfbqwkpw42hq37s0y26zmkxqlx4wblira"; depends=[qqman]; }; pwr = derive { name="pwr"; version="1.1-2"; sha256="1czganj70qszz32yx2jprhr8h9a2lpg67gwfwfjf8kpk97qvkalj"; depends=[]; }; pwt = derive { name="pwt"; version="7.1-1"; sha256="0926viwmwldmzlzbnjfijh00wrhgb0h4h0mlrls71pi5pjfldifa"; depends=[]; }; pwt8 = derive { name="pwt8"; version="8.1-0"; sha256="0jvskkn3c4m2lfxm9ivm8g96kcd7ynlmjpjqbrd6sqivas0z46r2"; depends=[]; }; @@ -5533,7 +5555,7 @@ qdapTools = derive { name="qdapTools"; version="1.1.0"; sha256="0k3mvcjj2fg2v3z8 qdm = derive { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; qgraph = derive { name="qgraph"; version="1.3.1"; sha256="1wmpsgmzl9qg4vjjjlbxqav3ck7p26gidsqv3qryx56jx54164wg"; depends=[colorspace corpcor d3Network ellipse fdrtool ggm ggplot2 glasso gtools Hmisc huge igraph jpeg lavaan Matrix plyr png psych reshape2 sem sna]; }; qgtools = derive { name="qgtools"; version="1.0"; sha256="0irqfaj2qqx7n1jfc0kmfpgzqrhwwlj0qizsmya94zk9d27bcpn5"; depends=[MASS Matrix]; }; -qicharts = derive { name="qicharts"; version="0.2.0"; sha256="0dinkcaz3dgi4r8nxzy57czi7b0192c4b9y5wbiqqf1l7b1zjqlp"; depends=[lattice latticeExtra]; }; +qicharts = derive { name="qicharts"; version="0.3.1"; sha256="1h2hf6psz5rkbg4s29576mz6cp9vyynw30sy999dx4yyriw3c3yb"; depends=[lattice latticeExtra]; }; qiimer = derive { name="qiimer"; version="0.9.2"; sha256="08625hz2n7yk9zk1k9sa46n2ggbw5qs0mlqkmzyjjh3qlnb1354a"; depends=[pheatmap]; }; qlcMatrix = derive { name="qlcMatrix"; version="0.9.4"; sha256="1nkk712h9nnaqshw766mvk72w6gq9abyry4q1a0ghn0naq3gyl0s"; depends=[Matrix slam]; }; qmap = derive { name="qmap"; version="1.0-3"; sha256="1c7qvmd5whi446nzssqvhz1j2mpx22nlzzdrcql84v18ry0dr18m"; depends=[fitdistrplus]; }; @@ -5567,7 +5589,7 @@ qualCI = derive { name="qualCI"; version="0.1"; sha256="09mzsy5ryyrn1gz9ahrh95cp qualV = derive { name="qualV"; version="0.3-1"; sha256="0p4yfgq2wxwis2w28mdb61x6hzm6sb9bczjdm9bc05ga5srr3sdd"; depends=[KernSmooth]; }; qualityTools = derive { name="qualityTools"; version="1.54"; sha256="0ylp5a49b4q4max4yz30ia7r12s4jrvqn9zx5a21qcnpinf8b932"; depends=[]; }; quantchem = derive { name="quantchem"; version="0.13"; sha256="1ga5xa7lsk04flfp1syjzpnvj3i2ypzh1m49vq1xkdwpm6axdy8n"; depends=[MASS outliers]; }; -quanteda = derive { name="quanteda"; version="0.8.0-4"; sha256="115vds7dinddva0mhwp8cgf28c4rc72bw0hpl6za6kcmlf8a8cyw"; depends=[ca data_table Matrix proxy Rcpp RcppArmadillo SnowballC stringi wordcloud]; }; +quanteda = derive { name="quanteda"; version="0.8.2-0"; sha256="17v1xilcivj57p7w562bj4224cqi5hap4lw7h12c29n26x2b33l3"; depends=[ca data_table Matrix proxy Rcpp RcppArmadillo SnowballC stringi wordcloud]; }; quantification = derive { name="quantification"; version="0.1.0"; sha256="0987389rr21fl3khgd3a1yq5821hljwm0xlyxgjy1km5hj81diap"; depends=[car]; }; quantmod = derive { name="quantmod"; version="0.4-5"; sha256="14y8xra36cg5zam2cmxzvkb8n2jafdpc8hhjv9xnwa91basrx267"; depends=[TTR xts zoo]; }; quantreg = derive { name="quantreg"; version="5.11"; sha256="0pyc1zknkjyvaix76bn84l90zavajsc7jx17x0zanllnh34siizp"; depends=[SparseM]; }; @@ -5596,7 +5618,7 @@ rCUR = derive { name="rCUR"; version="1.3"; sha256="1f38xbc5n91k2y88cg0sv1z2p4g5 rCarto = derive { name="rCarto"; version="0.8"; sha256="08813l4xfahjyn0jv48q8f6sy402n78dqsg01192pxl2dfc2i9ry"; depends=[classInt maptools RColorBrewer]; }; rChoiceDialogs = derive { name="rChoiceDialogs"; version="1.0.6"; sha256="0lp8amdalirpsba44aa3r31xnhmi36qb9qf8f8gdxxbarpgprsbi"; depends=[rJava]; }; rClinicalCodes = derive { name="rClinicalCodes"; version="1.0.1"; sha256="1p4p8r2n0k8h9xdzbngb95rshjp3376f5lsx228biqmswhpkhvlf"; depends=[RCurl rjson stringr tm XML]; }; -rDEA = derive { name="rDEA"; version="1.2-1"; sha256="0zm9vnysj5j3kq8n8ljgxqn45jf1c6cg7mcvpd36bs75kz03bwig"; depends=[maxLik slam truncnorm truncreg]; }; +rDEA = derive { name="rDEA"; version="1.2-2"; sha256="05adyzj9cyviz5dy0c86m9hkb8k13qkjxrw9xkk1710z50i427jd"; depends=[maxLik slam truncnorm truncreg]; }; rDNA = derive { name="rDNA"; version="1.30.1"; sha256="12h83zirv55sryc1zww97ws8kvsym1z7p7y5d4w43nam8mi3fpcd"; depends=[rJava]; }; rDVR = derive { name="rDVR"; version="0.1.1"; sha256="19a4f9k65bd49vkn3sxkjdmcpwyawk7gwmvancvqr745gfgs0wzg"; depends=[RCurl]; }; rEMM = derive { name="rEMM"; version="1.0-11"; sha256="0ynjn10gcmxs8qnh6idb34ppmki91l8sl720x70xkzcqpahy0nic"; depends=[cluster clusterGeneration igraph MASS proxy]; }; @@ -5637,7 +5659,7 @@ raincpc = derive { name="raincpc"; version="0.4"; sha256="0yzpyidvf24frf82pj7rar rainfreq = derive { name="rainfreq"; version="0.3"; sha256="0985ck2bglg22gfj7m0hc7kpk0apljsbssf1ci99mgk47yi8fk9v"; depends=[RCurl SDMTools]; }; ramify = derive { name="ramify"; version="0.3.1"; sha256="1anma8kwfhm4k74fakpifrymnrjxmmk48jf1apxkg3406xcxy020"; depends=[]; }; ramps = derive { name="ramps"; version="0.6-13"; sha256="1y7jaajzbf6d9xwr0rg0qr43l8kncgwbpfy5rpka90g3244v8nwz"; depends=[coda fields maps Matrix nlme]; }; -randNames = derive { name="randNames"; version="0.2"; sha256="0mgfwdbadfvxg1dp8aqp2c24lkhz3bi9ssmym4ns6xjq088l3ldh"; depends=[dplyr httr jsonlite]; }; +randNames = derive { name="randNames"; version="0.2.1"; sha256="177xdgrikvfcgjag382v5d1j72322ihnbggzxp9ip6p48ib4p3qg"; depends=[dplyr httr jsonlite]; }; randaes = derive { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; }; random = derive { name="random"; version="0.2.5"; sha256="0n96zv3b95msahpzdwfqsd9i9bq2z94flxxm8ghnqb0b75qcsdg0"; depends=[curl]; }; random_polychor_pa = derive { name="random.polychor.pa"; version="1.1.4-1"; sha256="1051v7krrawdqnhz9q01rsknp2i7iv82d370q7m9i9d9i8wfnpk5"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; @@ -5651,9 +5673,9 @@ randomizationInference = derive { name="randomizationInference"; version="1.0.3" randomizeBE = derive { name="randomizeBE"; version="0.3-2"; sha256="1mkq1fpr7bwlk01246qy6w175jcc94q8sb3pyjkdr8yms6iqk8i7"; depends=[]; }; randomizr = derive { name="randomizr"; version="0.2.2"; sha256="0g870sr8zjfl1dh3ay14kd6v6jg2qw86w2wcdzr8f201xy5i1fgr"; depends=[]; }; randtests = derive { name="randtests"; version="1.0"; sha256="03z3kxl4x0l91dsv65ld9kgc58z82ld1f4lk18i18dpvwcgkqk82"; depends=[]; }; -randtoolbox = derive { name="randtoolbox"; version="1.16"; sha256="03z4g2mmdywsgl95xbj80awirkgrghdk2kwhsh58p00aq4bpl5ff"; depends=[rngWELL]; }; +randtoolbox = derive { name="randtoolbox"; version="1.17"; sha256="107kckva43xpqncak8ll4h0mjm8lcks4jpf7dffgw5ggcc77ycrb"; depends=[rngWELL]; }; rangeMapper = derive { name="rangeMapper"; version="0.2-8"; sha256="0bxb37gy98smypjj27r3dbd0vfyvaqw2p25qv07j3isykcn2pxpn"; depends=[classInt lattice maptools raster RColorBrewer rgdal rgeos RSQLite sp]; }; -ranger = derive { name="ranger"; version="0.2.6"; sha256="0dyp4dvxxmydqyrk4d1xzvh4g9ad15hra96p8bf623csfgwj7naf"; depends=[Rcpp]; }; +ranger = derive { name="ranger"; version="0.2.7"; sha256="0ajzbbawhxmlcpy1vyka82xwfpgx07ng432w3s9xy8h58s12yljc"; depends=[Rcpp]; }; rankdist = derive { name="rankdist"; version="1.0.0"; sha256="1hzrm21s9zlmhkxl3zqbdizhi8256cvw2l5gwx24azq7gf87mh57"; depends=[hash optimx permute Rcpp]; }; rankhazard = derive { name="rankhazard"; version="1.0"; sha256="1kylg8yjrixbv86i2ffhhn8f5shsj8kvi66k202ari0li92y7dsg"; depends=[survival]; }; rappdirs = derive { name="rappdirs"; version="0.3"; sha256="1yjd91h1knagri5m4djal25p7925162zz5g6005h1fgcvwz3sszd"; depends=[]; }; @@ -5679,7 +5701,7 @@ rbmn = derive { name="rbmn"; version="0.9-2"; sha256="1zy832y399cmfmhpyfh7vfd293 rbounds = derive { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; }; rbugs = derive { name="rbugs"; version="0.5-9"; sha256="1kvn7x931gjpxymrz0bv50k69s1x1x9mv34vkz54sdkmi08rgb3y"; depends=[]; }; rbundler = derive { name="rbundler"; version="0.3.7"; sha256="0wmahn59h9vqm6bq1gwnf6mvfkyhqh6xvdc5hraszn1419asy26f"; depends=[devtools]; }; -rcbalance = derive { name="rcbalance"; version="1.6"; sha256="0nbwsisx4ajdccywwvpg2xcaf8b4b25zij2qcb39yzmlz0yk6jjz"; depends=[MASS plyr]; }; +rcbalance = derive { name="rcbalance"; version="1.7"; sha256="0k95dkig6m9g04skz2s6iqrldmzkz3w0pcyvi1dq20h6rz9a4ic0"; depends=[MASS plyr]; }; rcdd = derive { name="rcdd"; version="1.1-9"; sha256="1mwg9prf7196b7r262ggdqsfq1i7czm1a0apk4j5014cxzyb6j5s"; depends=[]; }; rcdk = derive { name="rcdk"; version="3.3.2"; sha256="02rlg3w8dbmag8b4z4wayh7xn61xc9g3647kxg91r0mvfhmrxl2h"; depends=[fingerprint iterators png rcdklibs rJava]; }; rcdklibs = derive { name="rcdklibs"; version="1.5.8.4"; sha256="0mzkr23f4d639vhxfdbg44hzxapmpqkhc084ikcj93gjwvdz903k"; depends=[rJava]; }; @@ -5695,7 +5717,7 @@ rdd = derive { name="rdd"; version="0.56"; sha256="1x61ik606mwn46x3qzgq8wk2f6d5q rddtools = derive { name="rddtools"; version="0.4.0"; sha256="1z9sl9fwsq8zs1ygmnjnh3p6h9hjkikbm4z7cdkxw66y0hxgn96s"; depends=[AER Formula ggplot2 KernSmooth lmtest locpol np rdd sandwich]; }; rdetools = derive { name="rdetools"; version="1.0"; sha256="0pkl990viv7ifr7ihgdcsww93sk2wlzp2cg931wywagfp8dijd02"; depends=[]; }; rdrobust = derive { name="rdrobust"; version="0.80"; sha256="02adafhbjp259hbbbk32yllgn35xxim2mwn6yixv4wh5dgr974v6"; depends=[]; }; -rdrop2 = derive { name="rdrop2"; version="0.6"; sha256="1yxg38v7r34f9rid5q6q1g9f30q3zc4dnkziyps3514l5dnbvk3j"; depends=[assertthat data_table dplyr httr jsonlite magrittr]; }; +rdrop2 = derive { name="rdrop2"; version="0.7.0"; sha256="03r3iqi796y7s8bnyca6nya2ys7s1rdxm00sy9c7l7sh0z6npcq4"; depends=[assertthat data_table dplyr httr jsonlite magrittr]; }; rdryad = derive { name="rdryad"; version="0.1.1"; sha256="0mqpkmwkznyxj0nn1v389p741dlc66dixcvljsn2rvg0q6p75fkj"; depends=[ape gdata OAIHarvester plyr RCurl RJSONIO stringr XML]; }; reGenotyper = derive { name="reGenotyper"; version="1.2.0"; sha256="13g4fhj25kdk6wbl1hcabcaxcpv0dj0hj2l502wl1aywk1fvmy8m"; depends=[gplots MatrixEQTL zoo]; }; readBrukerFlexData = derive { name="readBrukerFlexData"; version="1.8.2"; sha256="1cagv6l29h3p87h7c2bgba23v2wxrs2kg4zg1dk046m2x11mwx3c"; depends=[]; }; @@ -5758,6 +5780,7 @@ repijson = derive { name="repijson"; version="0.1.0"; sha256="16iypvsmh5r9pk2k6n replicatedpp2w = derive { name="replicatedpp2w"; version="0.1-1"; sha256="0q6mfrdjpx6nh4xgr5i7ka3xvnx9585xdhni020q4pm05rhimid2"; depends=[spatstat]; }; replicationInterval = derive { name="replicationInterval"; version="1.0.0"; sha256="1ll6gyibd41kasc3sn6hvydc6xaacx6h5q5nhj09ha36x4lgr0gb"; depends=[MBESS]; }; repmis = derive { name="repmis"; version="0.4.4"; sha256="12sw9l2nifkvri5kvgf0br7yqqmjlq5rj58g6yik8gh7wwy5157z"; depends=[data_table digest httr plyr R_cache]; }; +repo = derive { name="repo"; version="1.0"; sha256="103bjd880hd76qpipryl17l9972hwj5c3dxicjq0dcbdfmdk7q7h"; depends=[digest]; }; repolr = derive { name="repolr"; version="2.0"; sha256="10wg07sfxcxzswf3zh5sx2cm9dxjx11zymy82a4q9awnacb5gp9b"; depends=[gee]; }; reportRx = derive { name="reportRx"; version="1.0"; sha256="0npiflql0lq8sqp6xgydxbw7xdr0zdxj1s2h4bnpmn4clc05r7m4"; depends=[aod cmprsk geoR reshape stringr survival xtable]; }; reportr = derive { name="reportr"; version="1.1.2"; sha256="0lxnmay9vgg7dsa3scszx3v4lb6m3bv6kjl0dk7hrl7bd67azdrk"; depends=[]; }; @@ -5785,7 +5808,7 @@ revealedPrefs = derive { name="revealedPrefs"; version="0.2"; sha256="1f871y4wkj reweight = derive { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; }; rex = derive { name="rex"; version="1.0.1"; sha256="1k1s5rx3lpyh6apakaf4mw94y72zkxf14c2kj0d9njhf5j6g1sdj"; depends=[lazyeval magrittr]; }; rexpokit = derive { name="rexpokit"; version="0.24.1"; sha256="143zi6qb0l8vbx87jf58v1zfxqmvv6x4im1knd6q4dpp9gffqs22"; depends=[Rcpp SparseM]; }; -rfPermute = derive { name="rfPermute"; version="1.7"; sha256="1nnnrbznig7hkdg9hkpw1yfvn2rbgbshjmssz1afk8c1w3q9knsi"; depends=[ggplot2 gridExtra randomForest]; }; +rfPermute = derive { name="rfPermute"; version="1.9.2"; sha256="1rn61vscxgb0lq86id5sy56sjnfnpapzrpz363cl5x13j7028sjm"; depends=[ggplot2 gridExtra randomForest]; }; rfUtilities = derive { name="rfUtilities"; version="1.0-1"; sha256="0y0jn4c5dpr9drjyjg2vsgsb37s0l284hvh35zm53hs8f881ycx3"; depends=[randomForest]; }; rfigshare = derive { name="rfigshare"; version="0.3.7"; sha256="1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"; depends=[ggplot2 httpuv httr plyr RJSONIO XML yaml]; }; rfishbase = derive { name="rfishbase"; version="0.2-2"; sha256="09pa5zpw9rclf5pqj1wjjhdcblca9sm9xcs9ka3xfa7azj7n9ljd"; depends=[RCurl XML]; }; @@ -5881,7 +5904,7 @@ robustfa = derive { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf robustgam = derive { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; }; robustlmm = derive { name="robustlmm"; version="1.7-4"; sha256="0c9syqz1hbwwc9kfnsc1f321zy76q9c0rxgb9j1ac33sp5w5g88c"; depends=[ggplot2 lattice lme4 Matrix nlme robustbase xtable]; }; robustloggamma = derive { name="robustloggamma"; version="0.4-31"; sha256="19ycdvpzns46gjnkddwznnszs0941blpss7l0cqligv91cz7bkjc"; depends=[robustbase]; }; -robustreg = derive { name="robustreg"; version="0.1-7"; sha256="1nrz10065mwccil78c74vmkhinskpnk1vyp1ikrdw23vyk2l00nc"; depends=[Matrix Rcpp RcppArmadillo]; }; +robustreg = derive { name="robustreg"; version="0.1-8"; sha256="0ankpqdnjl5w3w73h6gp78klkjk43xjzhv8wv3vffdsr2fbpl8js"; depends=[Matrix Rcpp RcppArmadillo]; }; robustvarComp = derive { name="robustvarComp"; version="0.1-2"; sha256="187mcpih509hx15wjjr7z2h6h76mz2v0d8xgsxjd8wz7l3dnlp2f"; depends=[GSE numDeriv plyr robust robustbase]; }; rocc = derive { name="rocc"; version="1.2"; sha256="00yxbbphhwkg4sj2h7pd9vw86yavl711nk8yylwmjd3qv39qjml0"; depends=[ROCR]; }; rockchalk = derive { name="rockchalk"; version="1.8.92"; sha256="1mi1w8323m4q0s17cnafnlswgnlxqb5c9nq3rv8fq77k7klmq5rz"; depends=[car lme4 MASS tables]; }; @@ -5904,11 +5927,12 @@ rpart_plot = derive { name="rpart.plot"; version="1.5.2"; sha256="0aw0bhd0bliih7 rpart_utils = derive { name="rpart.utils"; version="0.5"; sha256="00ahvmly6cdf7qhhcic0dbjlljqq8kbhx15rc7vrkd3hzd55c0im"; depends=[rpart]; }; rpartScore = derive { name="rpartScore"; version="1.0-1"; sha256="15zamlzbf6avir8zfw88531zg5c0a6sc5r9v5cy9h08ypf34xf4y"; depends=[rpart]; }; rpartitions = derive { name="rpartitions"; version="0.1"; sha256="1gklsi4pqhk16xp9s49n1lr9ldm1vx61pvphjqsqkzrlxwcpx3j8"; depends=[hash]; }; +rpca = derive { name="rpca"; version="0.2.3"; sha256="135q3g8jmn9rwamrc9ss45cnbfyw8kxcbrf0kinw8asz70fihj9z"; depends=[]; }; rpf = derive { name="rpf"; version="0.45"; sha256="1d22wjhv14rl16kljn42j4hba30x28zd5svddrpxp1kraxjq5mn7"; depends=[mvtnorm RcppEigen]; }; rpg = derive { name="rpg"; version="1.4"; sha256="0sisn5l1qxlqg6jq4lzr7w3axkaw5jlpz8vl9gp2hs0spxsjhcyn"; depends=[RApiSerialize Rcpp uuid]; }; rphast = derive { name="rphast"; version="1.6"; sha256="0ni8969bj3pv0wl8l0v352pqw2d5mlshsdw1rb6wlxk7qzfi5cl2"; depends=[]; }; rplexos = derive { name="rplexos"; version="1.1.4"; sha256="1q9vlxhglmrwxh9g4wq98nc321kq7jhgkykp9hwl3bd26a1jcfjp"; depends=[data_table DBI doParallel dplyr foreach lubridate Rcpp RSQLite stringi tidyr]; }; -rplos = derive { name="rplos"; version="0.5.0"; sha256="1ajwm413w7p41ifrp4flskgaqilrs3shzjbb2wnmwgwcnnkw43h9"; depends=[dplyr ggplot2 httr jsonlite lubridate plyr reshape2 solr whisker]; }; +rplos = derive { name="rplos"; version="0.5.2"; sha256="0h8i6payk5yg0sxn07zw10jrbkf9pac6ljmkj6jsy681wirp20gg"; depends=[dplyr ggplot2 httr jsonlite lubridate plyr reshape2 solr whisker]; }; rplotengine = derive { name="rplotengine"; version="1.0-5"; sha256="1wwpfnr5vi8z26alm8y5gply0y4iniagimldzy2z696djzz8p8p8"; depends=[xtable]; }; rportfolios = derive { name="rportfolios"; version="1.0"; sha256="1zcv5ddmk15l0p03nlffimlhhpcc7l1c05xl2d1xlfk58rkvqns6"; depends=[]; }; rprime = derive { name="rprime"; version="0.1.0"; sha256="1v6n1qi0i7x8xgizbyvp1mnwc316lsan4rvam44fgjj45fcd79gd"; depends=[assertthat plyr stringi stringr]; }; @@ -5959,7 +5983,7 @@ rtfbs = derive { name="rtfbs"; version="0.3.4"; sha256="1z5rhxgi44xdv07g3l18ricx rtiff = derive { name="rtiff"; version="1.4.5"; sha256="0wpjp8qwfiv1yyirf2zj0696zb7m7fpzn953ii8vbmgzhakgr8kw"; depends=[pixmap]; }; rtkpp = derive { name="rtkpp"; version="0.8.6"; sha256="0alg3002q8mcqd55prmsa6hfwg0qfrv30aq5p85v094l8cl7qd8l"; depends=[Rcpp]; }; rtop = derive { name="rtop"; version="0.5-5"; sha256="05yygg85f981x2amf9y8nr4ymya3pkwlig8i1rf9b49jx11h5w8j"; depends=[gstat sp]; }; -rts = derive { name="rts"; version="1.0-3"; sha256="0jqk0p2q1vx9l6zf9pbc5k3lsw4hg5x1r6p0f7wjiks50x55pbl4"; depends=[raster xts zoo]; }; +rts = derive { name="rts"; version="1.0-10"; sha256="0fvs82n8lxbm4n8w22ahx7j38xhaafwvr3sqr3lrfni2cs346pzs"; depends=[raster sp xts zoo]; }; rtype = derive { name="rtype"; version="0.1-1"; sha256="0wjf359w7gb1nrhbxknzg7qdys0hdn6alv07rd9wm6zynnn1vwxy"; depends=[]; }; rucm = derive { name="rucm"; version="0.4"; sha256="1s3q6wfp9nb50rqsaq6h2wb48qvxncmlf8l4gm18pr25wkangfxq"; depends=[KFAS]; }; rugarch = derive { name="rugarch"; version="1.3-4"; sha256="1za92hqfaws8azf2zml1q8mlbirrdw3rb4rvwg6sclfx7z7gsqkh"; depends=[chron expm ks nloptr numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; }; @@ -6029,7 +6053,7 @@ scam = derive { name="scam"; version="1.1-9"; sha256="1hx8y324bgwvv888d34wq0nnmq scape = derive { name="scape"; version="2.2-0"; sha256="0dgbh65fg6i5x4lpfkshn382zcc4jk1wp62pwd2l2f59pyfb92a3"; depends=[coda Hmisc lattice]; }; scar = derive { name="scar"; version="0.2-1"; sha256="04x42414qxrz8c7xrnmpr00r46png2jy5giwicdx6gx8jwrkzhzs"; depends=[]; }; scatterD3 = derive { name="scatterD3"; version="0.1.1"; sha256="1xrs1a68x29fyzg6a3frr3nlapi1k6nk3ndg54fm6f54k8hvxdf3"; depends=[htmlwidgets]; }; -scatterplot3d = derive { name="scatterplot3d"; version="0.3-35"; sha256="1w0r7cyz01rzmgcf2x7wa4xs88ga6fd67wksyjyzrh2pdcbc56yx"; depends=[]; }; +scatterplot3d = derive { name="scatterplot3d"; version="0.3-36"; sha256="0bdxfdw23921h3rbpq0y4aixplzpkk95wgm2932kh0x7a4bnhswh"; depends=[]; }; schoRsch = derive { name="schoRsch"; version="1.2"; sha256="1dz4mws227a5h3kkmpnz06liy9n3k01ihvcxxwnj8283w3b23bci"; depends=[]; }; scholar = derive { name="scholar"; version="0.1.2"; sha256="1h1a6psgmiifi7p87ar3fr0mcfmg44yh4683dmqxrxrfcvgaxvca"; depends=[plyr R_cache stringr XML]; }; schoolmath = derive { name="schoolmath"; version="0.4"; sha256="06gcmm294d0bs5whvknrq48sk7li961lzy4bcncjg052zbbpn67x"; depends=[]; }; @@ -6060,7 +6084,7 @@ sdmvspecies = derive { name="sdmvspecies"; version="0.3.1"; sha256="1rpbj5559886 sdnet = derive { name="sdnet"; version="2.03.3"; sha256="1884pil3brm7llczacxda6gki501ddyc5m8ggqjix64kbvw37slv"; depends=[]; }; sdprisk = derive { name="sdprisk"; version="1.1-3"; sha256="1rwzi112fjckzxmhagpg60qm9a35fqx8g8xaypxsmnml6q00ysiq"; depends=[numDeriv PolynomF rootSolve]; }; sdtoolkit = derive { name="sdtoolkit"; version="2.33-1"; sha256="0pirgzcn8b87hjb35bmg082qp14idc5pfvm6dikpgkswag23hwh8"; depends=[]; }; -sdwd = derive { name="sdwd"; version="1.0.1"; sha256="1df8xx538ba3axi0jbkvyrdl7qnmkvh1x15kh57jmw3qbpf5gh56"; depends=[Matrix]; }; +sdwd = derive { name="sdwd"; version="1.0.2"; sha256="0l0w4jn2p9b7acp8gmlv4w8n662l397kbrm4glslik0vnmjv151w"; depends=[Matrix]; }; seacarb = derive { name="seacarb"; version="3.0.8"; sha256="0fhf5wqazhxahillgg2xpncb4n5yjvr02251wpb2v4s39v88a5yd"; depends=[oce]; }; sealasso = derive { name="sealasso"; version="0.1-2"; sha256="0cjy3fj170p5wa41c2hwscmhqxwkjq22vhg9kbajnq7df2s20jcp"; depends=[lars]; }; searchable = derive { name="searchable"; version="0.3.3.1"; sha256="0xc87i2q42j7dviv9nj4hkgjvpfiprkkjpgzwsy47vp7q8024dv0"; depends=[magrittr stringi]; }; @@ -6143,7 +6167,7 @@ shapefiles = derive { name="shapefiles"; version="0.7"; sha256="08ghndihs45kylbz shapes = derive { name="shapes"; version="1.1-10"; sha256="038xps6f8b6w9qa9csqk33ggmb311h5zxwsxr027bd95a3vmyijx"; depends=[MASS rgl scatterplot3d]; }; sharpshootR = derive { name="sharpshootR"; version="0.7-2"; sha256="04plsgmyil6znmcqx2j78n2vjj4y4mprb3wqbhwagapdhvp9rcis"; depends=[ape aqp circular cluster Hmisc igraph lattice latticeExtra plyr RColorBrewer reshape2 scales soilDB sp vegan]; }; sharx = derive { name="sharx"; version="1.0-4"; sha256="1flcflx6w93s8bk4lcwcscwx8vacdl8900ikwkz358jbgywskd5n"; depends=[dclone dcmle Formula]; }; -shiny = derive { name="shiny"; version="0.12.1"; sha256="041illlgpw47y88razd77xj8q2h3brf582bhh8p8mmn7rn2af0mc"; depends=[digest htmltools httpuv jsonlite mime R6 xtable]; }; +shiny = derive { name="shiny"; version="0.12.2"; sha256="0hdgvqsg0s7va55z2pf76898fslcnghpcjvwsqlfw2q441h7dkh9"; depends=[digest htmltools httpuv jsonlite mime R6 xtable]; }; shinyAce = derive { name="shinyAce"; version="0.1.0"; sha256="1031hzh647ys0d5hkw7cqxj0wgry3rxgq95fgs7slbm0rgx9g6f7"; depends=[shiny]; }; shinyBS = derive { name="shinyBS"; version="0.61"; sha256="0rhim4mbp4x9vvm7xkmpl7mhb9qd1gr96cr4dv330v863ra2kgji"; depends=[htmltools shiny]; }; shinyFiles = derive { name="shinyFiles"; version="0.6.0"; sha256="08cvpvrsr1bh0yh17ap20bmwxa4bsan3h6bicrxzanl2dlwp8kvr"; depends=[htmltools RJSONIO shiny]; }; @@ -6151,7 +6175,7 @@ shinyRGL = derive { name="shinyRGL"; version="0.1.0"; sha256="07llg1yg5vmsp89jk6 shinyTree = derive { name="shinyTree"; version="0.2.2"; sha256="08n2s6pppbxn23ijp6vms609p4qwlmfh9g0k5hdfqsqxjrz1nndi"; depends=[shiny]; }; shinybootstrap2 = derive { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; }; shinydashboard = derive { name="shinydashboard"; version="0.5.0"; sha256="1q2g0vdid14id489ybfhf6x67bmc4g2zhamw3vx9piqvdlfmnqg5"; depends=[htmltools shiny]; }; -shinyjs = derive { name="shinyjs"; version="0.0.7.0"; sha256="0yrv7qy7wbsi45gqia3vl0s7mi758j7qbkmh2hdbfs0aj7jxgr7y"; depends=[shiny]; }; +shinyjs = derive { name="shinyjs"; version="0.0.8.3"; sha256="0dd20p3j4yk9q6846s1ykxvp94kp06nykxrq29nhba8jgf9gm2g0"; depends=[shiny]; }; shinythemes = derive { name="shinythemes"; version="1.0.1"; sha256="0wv579cxjlnd7wkfqzy2x3qk7d1abql1nhw10rx1c4c808vsylkw"; depends=[shiny]; }; shopifyr = derive { name="shopifyr"; version="0.28"; sha256="1ypqgiqimdwj9fjy9ykk42rnkipb4cvdxy5m9z9jklvk5a7cgrml"; depends=[R6 RCurl RJSONIO]; }; shotGroups = derive { name="shotGroups"; version="0.6"; sha256="0khcgzli6114yqrglmsvhr8rwkkkwdkd06b50isbc24vpv6xbfx9"; depends=[boot coin CompQuadForm energy KernSmooth mvoutlier robustbase]; }; @@ -6168,7 +6192,7 @@ sievetest = derive { name="sievetest"; version="1.2.2"; sha256="0mbgkf014m6bc7qg sig = derive { name="sig"; version="0.0-5"; sha256="084wwpj5mnmq4k98ijbv23z80sj4axadc7c6hn3917dazsaa6ngn"; depends=[]; }; sigclust = derive { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; }; sigloc = derive { name="sigloc"; version="0.0.4"; sha256="13v2dlgsbcsqqm8yxls62i7r3sk8m3c78jv8f9lgdihq5pjnd9zp"; depends=[ellipse nleqslv]; }; -signal = derive { name="signal"; version="0.7-5"; sha256="0v6zmy25ikkrc2ravaj7k1qzxm3zdvj6g0d55lkyjv7pb3kl5m1k"; depends=[MASS]; }; +signal = derive { name="signal"; version="0.7-6"; sha256="1vsxramz5qd9q9s3vlqzmfdpmwl2rhlb2n904zw6f0fg0xxjfq3b"; depends=[MASS]; }; signalHsmm = derive { name="signalHsmm"; version="1.3"; sha256="0hx389ibk473mfycc8sj96ppz9hri4x9ni05fv32zvzxy8b9i9jv"; depends=[biogram Rcpp seqinr shiny]; }; signmedian_test = derive { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; }; simFrame = derive { name="simFrame"; version="0.5.3"; sha256="154d4k6x074ib813dp42l5l8v81x9bq2c8q0p5mwm63pj0rgf5f3"; depends=[lattice Rcpp]; }; @@ -6258,7 +6282,7 @@ snpRF = derive { name="snpRF"; version="0.4"; sha256="1amxc4jprrc6n5w5h9jm2as025 snpStatsWriter = derive { name="snpStatsWriter"; version="1.5-6"; sha256="04qhng888yih8gc7yd6rrxvvqf98x3c2xxz22gkwqx59waqd4jlq"; depends=[colorspace snpStats]; }; snpar = derive { name="snpar"; version="1.0"; sha256="0c9myg748jm7khqs8yhg2glxgar1wcf6gyg0xwbmw0qc41myzfnq"; depends=[]; }; snplist = derive { name="snplist"; version="0.13"; sha256="1v9n3gdvygx4s6hlm0ijyw04szxwn9c1dqnhaqn61a8yfkmmnxn8"; depends=[biomaRt DBI R_utils Rcpp RSQLite]; }; -sns = derive { name="sns"; version="1.0.0"; sha256="0qr5gj095xg48mqj7maz1m1zizx1jdjca8qygygqvak1b7nl4ccs"; depends=[coda mvtnorm]; }; +sns = derive { name="sns"; version="1.1.0"; sha256="1pppf1h39kv8jjngkcrq091ldzz3knjgcn81gfg7y54yndb2mapr"; depends=[coda mvtnorm numDeriv]; }; soc_ca = derive { name="soc.ca"; version="0.7.1"; sha256="0lg1bpbd0crywa29xc79cn3kr614wq4hr09xpwk17nv7q8qw8cnh"; depends=[ellipse ggplot2 gridExtra scales]; }; softImpute = derive { name="softImpute"; version="1.4"; sha256="07cxbzkl08q58m1455i139952rmryjlic4s2f2hscl5zxxmfdxcq"; depends=[Matrix]; }; softclassval = derive { name="softclassval"; version="1.0-20150416"; sha256="1zrf0nmyy4pfs4dzardghzznw1ahl21w4nykfh2pp8il4dpi21fs"; depends=[arrayhelpers svUnit]; }; @@ -6387,7 +6411,7 @@ sprint = derive { name="sprint"; version="1.0.7"; sha256="1yzx1qjpxx9yc0hbm1mmha sprinter = derive { name="sprinter"; version="1.1.0"; sha256="12v4l4fxijh2d46yzs0w4235a8raip5rfbxskl0dw7701ryh7n8g"; depends=[CoxBoost GAMBoost LogicReg randomForestSRC survival]; }; sprm = derive { name="sprm"; version="1.1"; sha256="0xnbdnzgf54r93bvnyjcdcqlr0q7s7f2cvayw681zi0ig3z633j0"; depends=[cvTools ggplot2 pcaPP reshape2]; }; sprsmdl = derive { name="sprsmdl"; version="0.1-0"; sha256="09klwsjp5w6p7dkn5ddmqp7m9a3zcmpr9vhcf00ynwyp1w7d26gi"; depends=[]; }; -spsann = derive { name="spsann"; version="1.0.0"; sha256="1kbrj4qnkmh6ss7vgkh6avvlqcgbz5ixwaya7p36z5zwxxb9mmrk"; depends=[gstat pedometrics Rcpp sp SpatialTools]; }; +spsann = derive { name="spsann"; version="1.0.1"; sha256="0hdanihvcwmqsjsc2hinxwdmkkxyvv8qa9sp25mb9vf8ky3w4msm"; depends=[pedometrics Rcpp sp SpatialTools]; }; spsmooth = derive { name="spsmooth"; version="1.1-3"; sha256="09b740586zyi8npq0bmy8qifs9rq0rzhs9c300fr6pjpc7134xn4"; depends=[mgcv]; }; spsurvey = derive { name="spsurvey"; version="3.0"; sha256="15i10a6hhk1wwnyd4lbrqaql8i4s10302bxmpr0s5cyifs084l77"; depends=[deldir foreign MASS rgeos sp]; }; spt = derive { name="spt"; version="1.13-8-8"; sha256="18s74pxfmsjaj92z2a34nq90caf61s84c616yv33a0xvfvp32qr5"; depends=[]; }; @@ -6396,7 +6420,7 @@ spuRs = derive { name="spuRs"; version="2.0.0"; sha256="0lbc3nny6idijdaxrxfkfrn4 sqldf = derive { name="sqldf"; version="0.4-10"; sha256="0n8yvrg3gjgbc3vzq0vlf7fwhgm28kwf0jv25qy44x21n6fg11h7"; depends=[chron DBI gsubfn proto RSQLite]; }; sqliter = derive { name="sqliter"; version="0.1.0"; sha256="17jjljq60szz0m8p2wc5l56659aap7an5gknc848dp89ycjgj3zx"; depends=[DBI functional RSQLite stringr]; }; sqlutils = derive { name="sqlutils"; version="1.2"; sha256="0dq4idg8i4hv9xg8jllllizqf3s75pdfm1wgncdjj52xhxh169pf"; depends=[DBI roxygen2 stringr]; }; -squash = derive { name="squash"; version="1.0.6"; sha256="16iplngzzlif999z821a9bwx9jlmikdvwnk6p6d9w75b1fsbc0pz"; depends=[]; }; +squash = derive { name="squash"; version="1.0.7"; sha256="1wdnzagibh9fz7a3x6m4ixckh7493shvwxg7cn5kpnfzf8m1imyj"; depends=[]; }; sra = derive { name="sra"; version="0.1.1"; sha256="03nqjcydl58ld0wq1f9f5p666qnvdfxb5vhd584sdilw1b730ykd"; depends=[]; }; srd = derive { name="srd"; version="1.0"; sha256="04j2gj7fn7p2rm34haayswrfhn6w5lln439d07m9g4c020kqqsr3"; depends=[animation colorspace plyr stringr survival]; }; ss3sim = derive { name="ss3sim"; version="0.8.2"; sha256="1gj3kf4ccd5n2jr4sm50gny5x1zq4brkhqgw0nww41spnimascfr"; depends=[gtools lubridate plyr r4ss reshape2]; }; @@ -6433,7 +6457,7 @@ statfi = derive { name="statfi"; version="0.9.8"; sha256="0kg9bj2mmd95ysg604rcg4 stationaRy = derive { name="stationaRy"; version="0.3"; sha256="151hsda3j8ii40v5z6nh6ypahrl0b2zlfdii75xlrpwryb7n3cq6"; depends=[downloader dplyr plyr readr]; }; statmod = derive { name="statmod"; version="1.4.21"; sha256="138lh9qa25w6vaksbq43iqisj4c8hvmkjc3q81fn7m8b7zlnz6da"; depends=[]; }; statnet = derive { name="statnet"; version="2015.6.2"; sha256="0dvkiz7i5ljnbs6qxz4a2v4rqynn2fi4wy4vd1hqhf4kpkj0amna"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm]; }; -statnet_common = derive { name="statnet.common"; version="3.2.2"; sha256="1xdkc1pyf6wfb86dwz6bkjli5qw6yz6dvlxwp5bpgkpg83aa9n7g"; depends=[]; }; +statnet_common = derive { name="statnet.common"; version="3.2.3"; sha256="0z1nnav5kfjj5a54c7l8fingi3f4cm0nhlyyrwabxg98rydwxldm"; depends=[]; }; statnetWeb = derive { name="statnetWeb"; version="0.3.4"; sha256="1nkis4l6yzpjcwxryskqfjgc2naxplzjc3gpp6xvpl0pcvw9mdk7"; depends=[ergm network RColorBrewer shiny sna]; }; stcm = derive { name="stcm"; version="0.1.1"; sha256="05p0lp0p1mgcsf3mi3qgx42pgpv04m5wfmqa14gp63ialkl9pgx5"; depends=[caret dendextend ggplot2 magrittr plyr QCA randomForest XML]; }; steepness = derive { name="steepness"; version="0.2-2"; sha256="0bw7wm7n2xspkmj90qsjfssnig683s3qwg1ndkq2aw3f6clh4ilm"; depends=[]; }; @@ -6487,8 +6511,8 @@ subselect = derive { name="subselect"; version="0.12-5"; sha256="00wlkj6p0p2x057 subsemble = derive { name="subsemble"; version="0.0.9"; sha256="0vzjmxpdwagqb9p2r4f2xyghmrprx3nk58bd6zfskdgj0ymfgz5z"; depends=[SuperLearner]; }; subtype = derive { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; }; sudoku = derive { name="sudoku"; version="2.6"; sha256="13j7m06m38s654wn75kbbrin5nqda4faiawlsharxgrljcibcbrk"; depends=[]; }; -sudokuAlt = derive { name="sudokuAlt"; version="0.1-5"; sha256="048fxib2b2wz0amgb1gxlpqrd5w8fci5yjrv0la0mhs9vz42sjd2"; depends=[]; }; -summarytools = derive { name="summarytools"; version="0.3"; sha256="1hhkhpyaj8sc62vap5s7ds0kmk1jiy6gdvsz65ynqy2qfz58c3ms"; depends=[htmltools pander rapportools rstudioapi xtable]; }; +sudokuAlt = derive { name="sudokuAlt"; version="0.1-6"; sha256="1x3h6si0g4k5xc327daa85k74qh3dqbql7b4ynmasrb5xpcnb92b"; depends=[]; }; +summarytools = derive { name="summarytools"; version="0.4"; sha256="1hf20fddi128jv083ljylwqg1ij39hyf6kdnzfxalczl9572wih9"; depends=[htmltools pander pryr rapportools rstudioapi xtable]; }; supclust = derive { name="supclust"; version="1.0-7"; sha256="0437pccagvqv6ikdsgzpif9yyiv6p24lhn5frk6yqby2asj09727"; depends=[class rpart]; }; supcluster = derive { name="supcluster"; version="1.0"; sha256="1rkd4bpzzvzbmqaj907pqv53hxcgic0jklbsf5iayf0ra768b5w6"; depends=[gtools mvtnorm]; }; superMDS = derive { name="superMDS"; version="1.0.2"; sha256="0jxbwm3izk7bc3bd01ygisn6ihnapg9k5lr6nbkr96d3blpikk04"; depends=[]; }; @@ -6541,7 +6565,7 @@ svmpath = derive { name="svmpath"; version="0.953"; sha256="0hqga4cwy1az8cckh3nk svyPVpack = derive { name="svyPVpack"; version="0.1-1"; sha256="15k5ziy2ng853jxl66wjr27lzc90l6i5qr08q8xgcs359vn02pmp"; depends=[survey]; }; swamp = derive { name="swamp"; version="1.2.3"; sha256="1xpnq5yrmmsx3d48x411p7nx6zmwmfc9hz6m3v9avvpjkbc3glkg"; depends=[amap gplots impute MASS]; }; sweidnumbr = derive { name="sweidnumbr"; version="0.6.1"; sha256="0fpbqh5ff54slmpvvyp02gwclz4p1rca3qfdb2xxn19sfiqx0wf7"; depends=[lubridate stringr]; }; -swfscMisc = derive { name="swfscMisc"; version="1.0.3"; sha256="0ciwvxpafpc6an58r1ffkab8kj4np6l2kbpkijnqnfbf6cya0aim"; depends=[mapdata maps]; }; +swfscMisc = derive { name="swfscMisc"; version="1.0.6"; sha256="14bbcn8xkc32nagi92sahdvfbgfd4v7pari1c004dz0qgxxcnz1h"; depends=[mapdata maps spatstat]; }; swirl = derive { name="swirl"; version="2.2.21"; sha256="0lpin7frm1a6y9lz0nyykhvydr1qbx85iqy24sm52r1vxycv2r8h"; depends=[digest httr RCurl stringr testthat yaml]; }; switchnpreg = derive { name="switchnpreg"; version="0.8-0"; sha256="1vaanz01vd62ds2g2xv4kjlnvp13h59n8yqikwx07293ixd4qhpw"; depends=[expm fda HiddenMarkov MASS]; }; switchr = derive { name="switchr"; version="0.9.10"; sha256="02595b4mhhgm8j1abmk78z27fz27kr0mg01d7hf7n6yv6ybhn0qz"; depends=[]; }; @@ -6569,7 +6593,7 @@ syuzhet = derive { name="syuzhet"; version="0.2.0"; sha256="1l83wjiv1xsxw4wrcgcj taRifx = derive { name="taRifx"; version="1.0.6"; sha256="10kp06hkdx1qrzh2zs9mkrgcnn6d31cldjczmk5h9n98r34hmirx"; depends=[plyr reshape2]; }; taRifx_geo = derive { name="taRifx.geo"; version="1.0.6"; sha256="0w7nwp3kvidqhwaxaiq267h99akkrj6xgkviwj0w01511m2lzghs"; depends=[RCurl rgdal rgeos RJSONIO sp taRifx]; }; tab = derive { name="tab"; version="3.1.1"; sha256="05wypi4v9r2qlgwafd9f58vnxn2c4fnz18l8xpb24nhdgm35adqy"; depends=[gee survey survival]; }; -taber = derive { name="taber"; version="0.0.1"; sha256="1dqcsxl82s96rlw5jx8wzdvx351qd9jz6npfrhnwifr7vxhl2prd"; depends=[dplyr magrittr]; }; +taber = derive { name="taber"; version="0.1.0"; sha256="07a18kn65b4cxxf1z568n7adp6y3qx96nrff3a3714x241sd5p6i"; depends=[dplyr magrittr]; }; table1xls = derive { name="table1xls"; version="0.3.1"; sha256="0zd93wrdj4q0ph375qlgdhpqm3n8s941vks5h07ks9gc8id1bnx5"; depends=[XLConnect]; }; tableone = derive { name="tableone"; version="0.6.3"; sha256="0r91vzq3whz949kxg9q9bf413r41cxqsjvmicmb4najhwzhdr9fv"; depends=[e1071 gmodels]; }; tableplot = derive { name="tableplot"; version="0.3-5"; sha256="1jkkl2jw7lwm5zkx2yaiwnq1s3li81vidjkyl393g1aqm9jf129l"; depends=[]; }; @@ -6585,7 +6609,7 @@ tawny_types = derive { name="tawny.types"; version="1.1.3"; sha256="1v0k6nn45rdc taxize = derive { name="taxize"; version="0.6.0"; sha256="0zxlawj79l117hj3d93663xdzbkcq5gh6m090yfbvkzrb6a4rq3f"; depends=[ape bold data_table foreach httr jsonlite plyr RCurl reshape2 stringr Taxonstand XML]; }; tbart = derive { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp]; }; tbdiag = derive { name="tbdiag"; version="0.1"; sha256="1wr2whgdk84426hb2pf8iiyradh9c61gyazvcrnbkgx2injkz65q"; depends=[]; }; -tcR = derive { name="tcR"; version="2.1"; sha256="03q9smpc63d306apgszr2l99gdndsj39zx0nkdlkw0bjwhc1pd5y"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 roxygen2 stringdist]; }; +tcR = derive { name="tcR"; version="2.1.1"; sha256="0lrw05n80110lwhms3gjbrh87rlsvib2hpfc1balf1wlrzd2ynj4"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 roxygen2 stringdist]; }; tcltk2 = derive { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; tclust = derive { name="tclust"; version="1.2-3"; sha256="0a1b7yp4l9wf6ic5czizyl2cnxrc1virj0icr8i6m1vv23jd8jfp"; depends=[cluster mclust mvtnorm sn]; }; tdr = derive { name="tdr"; version="0.11"; sha256="1ga1lczqj5pka2yz7igxfm83xmkx7lla8pz6ryij0ybn284agszs"; depends=[ggplot2 lattice RColorBrewer]; }; @@ -6612,7 +6636,7 @@ tfer = derive { name="tfer"; version="1.1"; sha256="19d31hkxs6dc4hvj5495a3kmydm2 tfplot = derive { name="tfplot"; version="2015.4-1"; sha256="1qrw8x7pz7xcmpym3j1d095bhvy2s7znxplml1qyw5minc67n1mh"; depends=[tframe]; }; tframe = derive { name="tframe"; version="2015.1-1"; sha256="10igwmrfslyz3z3cbyldik8fcxq43pwh60yggka6mkl0nzkxagbd"; depends=[]; }; tframePlus = derive { name="tframePlus"; version="2015.1-2"; sha256="043ay79x520lbh4jm2nb3331pwd7dvwfw20k1kc9cxbplxiy8pnb"; depends=[tframe timeSeries]; }; -tgcd = derive { name="tgcd"; version="1.4"; sha256="108i7kkfkpgavs8d2c6aih9winfqhin777jn5zfxzkjd6clj857i"; depends=[]; }; +tgcd = derive { name="tgcd"; version="1.5"; sha256="0yvb0yc5vwnd054lfgzwg96pvaf8q41x5f03ih3schrl32z3pvv6"; depends=[]; }; tglm = derive { name="tglm"; version="1.0"; sha256="1gv33jq3bzd5wlrqjvcfb1ax258q9asawkdi64rbj18qp7fg2dbx"; depends=[BayesLogit coda mvtnorm truncnorm]; }; tgp = derive { name="tgp"; version="2.4-11"; sha256="0hdi05bz9qn4zmljfnll5hk9j8z9qaqmya77pdcgr6vc31ckixw5"; depends=[maptree]; }; tgram = derive { name="tgram"; version="0.2-2"; sha256="091g6j5ry1gmjff1kprk5vi2lirl8zbynqxkkywaqpifz302p39q"; depends=[zoo]; }; @@ -6689,6 +6713,7 @@ traitr = derive { name="traitr"; version="0.14"; sha256="1pkc8wcq55229wkwb54hg9n traits = derive { name="traits"; version="0.1.0"; sha256="0xn4jznf4fvm7d6yinyw8viik9gdnfskcgavwdb7r9als4qxqs58"; depends=[data_table dplyr httr jsonlite taxize XML]; }; traj = derive { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster GPArotation NbClust pastecs psych]; }; trajectories = derive { name="trajectories"; version="0.1-3"; sha256="1lk2mxfsf8x8idhb4dcj9lqvkjwm2yarvjid42xr2a9wwylvz9vq"; depends=[lattice sp spacetime]; }; +transcribeR = derive { name="transcribeR"; version="0.0.0"; sha256="0y2kxg2da71i962fhsjxsr2ic3b31fmffhj3gg97b0nykfpcviib"; depends=[httr]; }; translate = derive { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; }; translateR = derive { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; }; translateSPSS2R = derive { name="translateSPSS2R"; version="1.0.0"; sha256="11qnf44aq0dykcsv29faa9r4fcw9cc9rkgczsqx3mngvg3bilada"; depends=[car data_table e1071 foreign Hmisc plyr stringr tidyr zoo]; }; @@ -6710,6 +6735,7 @@ triangle = derive { name="triangle"; version="0.8"; sha256="0jdphz1rf4cx4y28syff trifield = derive { name="trifield"; version="1.1"; sha256="0xk48fkd5xa3mfn3pwdya0ihpkwnh20sgj3rc7fmzjil47kqscvy"; depends=[]; }; trimTrees = derive { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[mlbench randomForest]; }; trimcluster = derive { name="trimcluster"; version="0.1-2"; sha256="0lsgbg93hm0w1rdb813ry0ks2l0jfpyqzqkf3h3bj6fch0avcbv2"; depends=[]; }; +trimr = derive { name="trimr"; version="1.0.0"; sha256="0f6h7fwp1888fip0ybh91bgi2la5k37ylrllginv3dfrd914vsrm"; depends=[]; }; trioGxE = derive { name="trioGxE"; version="0.1-1"; sha256="1ra86l3i7fhb6nsy8izixyvm6z23shv7fcjmnnpil54995j15ax4"; depends=[gtools mgcv msm]; }; trip = derive { name="trip"; version="1.1-21"; sha256="0rawckw3xd8kz2jn6xgspgl5axabjcp4xh4kp93n3h41xlarv9xa"; depends=[maptools MASS raster sp spatstat]; }; tripEstimation = derive { name="tripEstimation"; version="0.0-42"; sha256="17spnvrrqv89vldd496wc1psmaby0mhw9nh0qnfm7yc2jcqaf5nb"; depends=[lattice mgcv rgdal sp zoo]; }; @@ -6778,7 +6804,7 @@ upclass = derive { name="upclass"; version="2.0"; sha256="0jkxn6jgglw6pzzbcvi1pn uplift = derive { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; }; urca = derive { name="urca"; version="1.2-8"; sha256="0gyjb99m6w6h701vmsav16jpfl5276vlyaagizax8k20ns9ddl4b"; depends=[nlme]; }; urltools = derive { name="urltools"; version="1.2.0"; sha256="0fn84xb9yykpl2lccl75f675braaswfsr8p17grvnaplf8hpl8gj"; depends=[Rcpp]; }; -usdm = derive { name="usdm"; version="1.1-12"; sha256="0padc9ppfisnjg1nzw5csv2zki6dby7487lis8pixf1hhbinsnci"; depends=[raster]; }; +usdm = derive { name="usdm"; version="1.1-15"; sha256="1638fv8if7pcnm6y44w3vbmivgcg4a577zd2jwhmp00vrwml2a9m"; depends=[raster sp]; }; useful = derive { name="useful"; version="1.1.8"; sha256="1lzl7rr9qxqa0ga6ml7qi7wi02fd4isgpfskvi3igy10iw1zv3hb"; depends=[ggplot2 plyr scales]; }; userfriendlyscience = derive { name="userfriendlyscience"; version="0.3-0"; sha256="0gz59n315dbjlyh6fdqihr1x458wplnd43q2gw9s6f9b55359m2c"; depends=[car fBasics foreign GGally ggplot2 GPArotation knitr lavaan ltm MASS MBESS mosaic plyr psych pwr SuppDists xtable]; }; uskewFactors = derive { name="uskewFactors"; version="1.0"; sha256="1ixcxqw8ai77ndn1cfkq53a090fgs95yzvas1qg2siwpfsm4yix6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; @@ -6851,7 +6877,7 @@ weatherData = derive { name="weatherData"; version="0.4.1"; sha256="19ynb9w52ay1 weatherr = derive { name="weatherr"; version="0.1"; sha256="06ig2l5wiy8irzpzrv3q2lx3il9b4jsn5jxccm8b37g8i89v2jfp"; depends=[ggmap lubridate RJSONIO XML]; }; webchem = derive { name="webchem"; version="0.0.1"; sha256="0hfsjaffxz78mxxh2wx5api2blnpg5y16lyc0jf1zmq7zkhccx3l"; depends=[RCurl RJSONIO XML]; }; webreadr = derive { name="webreadr"; version="0.3.0"; sha256="1xbp1mmqabl9kdg07ysqva5rxfm59q698hm8av481hd3ggcqvv98"; depends=[Rcpp readr]; }; -webuse = derive { name="webuse"; version="0.1.1"; sha256="1xvf3ll84x7gxz1n9al64hgbbmb7agbbn7m1llawvg2m9jgabclf"; depends=[rio]; }; +webuse = derive { name="webuse"; version="0.1.2"; sha256="0ks3pb9ir778j9x4l0s4ly2xa1jc9syddqm65wkck52q3lrarg3l"; depends=[haven]; }; webutils = derive { name="webutils"; version="0.3"; sha256="1wzpwigc5mmdnz453qr4s1viaslgdrcg238n25qcg4xjakmnxrss"; depends=[jsonlite]; }; webvis = derive { name="webvis"; version="0.0.2"; sha256="1cdn9jrpg2sbx4dsj0xf7m0daqr7fqiw3xy1lg0i0qn9cpvi348f"; depends=[]; }; weightedScores = derive { name="weightedScores"; version="0.9.1"; sha256="0wd2ymxy8yh3l4xd3xgifbihi89h53wy6n84x7x26px12c70q8fa"; depends=[mvtnorm rootSolve]; }; @@ -6870,6 +6896,7 @@ wikibooks = derive { name="wikibooks"; version="0.2"; sha256="178lhri1b8if2j7y7l wikipediatrend = derive { name="wikipediatrend"; version="1.1.6"; sha256="1yw22zs1rx4x8hk3fi4f0hbxmic102j9gj62dzwmsk6k02s6wvgw"; depends=[httr jsonlite RCurl rvest stringr]; }; wildlifeDI = derive { name="wildlifeDI"; version="0.2"; sha256="0z8zyrl3d73x2j32l6xqz5nwhygzy7c9sjfp6bql5acyfvn7ngjv"; depends=[adehabitatLT rgeos sp]; }; windex = derive { name="windex"; version="1.0"; sha256="0ci10x6mm5i03j05fyadxa0ic0ngpyp5nsn05p9m7v1is5jhxci0"; depends=[ape geiger scatterplot3d]; }; +wiod = derive { name="wiod"; version="0.3.0"; sha256="1f151xmc6bm5d28w5123nm0hv7j1v8hay4jk5fk8pwn6yljl1pah"; depends=[decompr gvc]; }; witness = derive { name="witness"; version="1.2"; sha256="1pccn7czm1q0w31zpmky5arkcbnfl94gh1nnkf8kmcccdrr3lxph"; depends=[]; }; wkb = derive { name="wkb"; version="0.1-0"; sha256="0ynamg8zrk80j5ysyg7pymdcxzlscbhhygp8czmsd33p2y31pggd"; depends=[sp]; }; wle = derive { name="wle"; version="0.9-9"; sha256="032zqfqg6ghg56zgr005g8q94zskmbzv1p08lxv227ikkbmnwn53"; depends=[circular]; }; @@ -6885,7 +6912,7 @@ wpp2008 = derive { name="wpp2008"; version="1.0-1"; sha256="0gd3vjw1fpzhp3qlf1jp wpp2010 = derive { name="wpp2010"; version="1.2-0"; sha256="1h87r1cn4lnx80dprvawsyzfkriscqjgr27gvv7n19wvsx8qd57k"; depends=[]; }; wpp2012 = derive { name="wpp2012"; version="2.2-1"; sha256="00283s4r36zzwn67fydrl7ldg6jhn14qkf47h0ifmsky95bd1n5k"; depends=[]; }; wppExplorer = derive { name="wppExplorer"; version="1.6-2"; sha256="1y9mdghq4is81gabx47pm1kfay67zv3b9hxz58lhml68wwwsfmsj"; depends=[ggplot2 googleVis Hmisc plyr reshape2 shiny wpp2012]; }; -wq = derive { name="wq"; version="0.4.3"; sha256="1lgxf5pfw3563dpyq0dgj4ps2mc5nqh56y1i77ypscj5lrcgjxrf"; depends=[ggplot2 reshape2 zoo]; }; +wq = derive { name="wq"; version="0.4.4"; sha256="1c99jr6wzalz2k7m85j6k1rmv33vrijkrrg24kjr6i08b4xgsxc5"; depends=[ggplot2 reshape2 zoo]; }; wrassp = derive { name="wrassp"; version="0.1.3"; sha256="1xza4w5dgc6gda9ybmq386jnb1gkahdi6sds5dqay7pm5mjql6fl"; depends=[]; }; write_snns = derive { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; }; wrspathrow = derive { name="wrspathrow"; version="0.1"; sha256="1xkh12aal85qhk8d0pdj2qbi6pp4jnr6zbxkhdw2zwav57ly3f4i"; depends=[raster rgdal rgeos sp wrspathrowData]; }; @@ -6898,6 +6925,8 @@ x_ent = derive { name="x.ent"; version="1.1.2"; sha256="0wbbhsnlm5yln72h648nz3y5 x12 = derive { name="x12"; version="1.6.0"; sha256="0bl50nva4ai8p24f9hr622m0fc5nmbjakn3rsvl79g050gjsd4i3"; depends=[stringr]; }; x12GUI = derive { name="x12GUI"; version="0.13.0"; sha256="1mga7g9gwb3nv2qs27lz4n9rp6j3svads28hql88sxaif6is3nk1"; depends=[cairoDevice Hmisc lattice RGtk2 stringr x12]; }; xergm = derive { name="xergm"; version="1.5"; sha256="1gjdcvpi84s0cy52a27n872ygb50mqw0w5117s3h7v1j68w88wv8"; depends=[boot coda ergm igraph lme4 Matrix network Rcpp ROCR sna speedglm statnet statnet_common texreg vegan]; }; +xergm_common = derive { name="xergm.common"; version="1.5.1"; sha256="0fxgzbczqbbir8f70d9k5d3jbih4nc8fs3l41wjbbdi9lvafqa0l"; depends=[ergm]; }; +xgboost = derive { name="xgboost"; version="0.4-2"; sha256="1m6jv1ww0cxqg87kq412akcwimj6i7ncg7anrbfhbq2h5v53brak"; depends=[data_table magrittr Matrix stringr]; }; xgobi = derive { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; }; xhmmScripts = derive { name="xhmmScripts"; version="1.1"; sha256="1qryyb34jx9c64l8bnwp40b08y81agdj5w0icj8dk052x50ip1hl"; depends=[gplots plotrix]; }; xkcd = derive { name="xkcd"; version="0.0.4"; sha256="1hwr3ylgflzizgp8ffwdv9cgcngpjwmpxvgrvg8ad89a40l1mxcr"; depends=[extrafont ggplot2 Hmisc]; }; @@ -6912,10 +6941,11 @@ xtermStyle = derive { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb xts = derive { name="xts"; version="0.9-7"; sha256="163hzcnxrdb4lbsnwwv7qa00h4qlg4jm289acgvbg4jbiywpq7zi"; depends=[zoo]; }; yaImpute = derive { name="yaImpute"; version="1.0-26"; sha256="00w127wnwnhkfkrn4764l1ap3d3njlidglk9izcxm0n4kqj0zb49"; depends=[]; }; yacca = derive { name="yacca"; version="1.1"; sha256="0wg2wgvh1najmccmgzyigj11mshrdb8w4r2pqq360dracpn0ak6x"; depends=[]; }; +yakmoR = derive { name="yakmoR"; version="0.1.1"; sha256="09aklz79s0911p2wnpd7gc6vrbr9lmiskhkahsc63pdigggmq9f7"; depends=[BBmisc checkmate Rcpp]; }; yaml = derive { name="yaml"; version="2.1.13"; sha256="18kz5mfn7qpif5pn91w4vbrc5bkycsj85vwm5wxwzjlb02i9mxi6"; depends=[]; }; ycinterextra = derive { name="ycinterextra"; version="0.1"; sha256="0hr37izbbmxqkjy6a7q8vcn0vs8an1ck9y8xfjpl5z0rygi8xc1v"; depends=[mcGlobaloptim]; }; yhat = derive { name="yhat"; version="2.0-0"; sha256="0vdhkknmms7zy7iha894jn1hr1h5w67pr53r0q67m7p404w21iza"; depends=[boot miscTools plotrix yacca]; }; -yhatr = derive { name="yhatr"; version="0.13.6"; sha256="0g08ass0vrqcmw1zfybiaqbrspcwyf4bsmcmzbz3nzdlkgwbn3bh"; depends=[httr jsonlite plyr RCurl rjson stringr]; }; +yhatr = derive { name="yhatr"; version="0.13.7"; sha256="1n4n8v8qz3isvg8g1cwh0xz83g65n01x9pwzbxzvqidw5ip4ybb0"; depends=[httr jsonlite plyr RCurl rjson stringr]; }; ykmeans = derive { name="ykmeans"; version="1.0"; sha256="0xfji2fmslvc059kk3rwkv575ffzl787sa9d4vw5hxnsmkn8lq50"; depends=[foreach plyr]; }; yuima = derive { name="yuima"; version="1.0.73"; sha256="1nb91c3ii643sdw5yn8q55g5sy0x04xp9z4z3jipc72r6qcc84vw"; depends=[cubature expm mvtnorm zoo]; }; zCompositions = derive { name="zCompositions"; version="1.0.3"; sha256="0lxy201ys9dvv8c09q8wbks1c2jkjyd1bbrxhjr7zi9j7m0parl7"; depends=[MASS NADA truncnorm]; };