Merge pull request #105611 from bcdarwin/mne-python

pkgs/development/python-modules/mne-python/default.nix

@@ -0,0 +1,59 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, isPy27
+, numpy
+, scipy
+, pytestCheckHook
+, pytestcov
+, pytest-timeout
+, h5py
+, matplotlib
+, nibabel
+, pandas
+, scikitlearn
+}:
+
+buildPythonPackage rec {
+  pname = "mne-python";
+  version = "0.21.2";
+
+  disabled = isPy27;
+
+  # PyPI dist insufficient to run tests
+  src = fetchFromGitHub {
+    owner = "mne-tools";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "18nfdbkffmxzkkbp3d4w8r2kfi0sxip3hy997d3mx6dy74jc7nmg";
+  };
+
+  propagatedBuildInputs = [ numpy scipy ];
+
+  # all tests pass, but Pytest hangs afterwards - probably some thread hasn't terminated
+  doCheck = false;
+  checkInputs = [
+    pytestCheckHook
+    pytestcov
+    pytest-timeout
+    h5py
+    matplotlib
+    nibabel
+    pandas
+    scikitlearn
+  ];
+  preCheck = ''
+    export HOME=$TMP
+    export MNE_SKIP_TESTING_DATASET_TESTS=true
+    export MNE_SKIP_NETWORK_TESTS=1
+  '';
+
+  pythonImportsCheck = [ "mne" ];
+
+  meta = with lib; {
+    homepage = "https://mne.tools";
+    description = "Magnetoencephelography and electroencephalography in Python";
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ bcdarwin ];
+  };
+}

pkgs/top-level/python-packages.nix

@@ -3832,6 +3832,8 @@ in {
 
   mnemonic = callPackage ../development/python-modules/mnemonic { };
 
+  mne-python = callPackage ../development/python-modules/mne-python { };
+
   mnist = callPackage ../development/python-modules/mnist { };
 
   mocket = callPackage ../development/python-modules/mocket { };