MirrorHub/nixpkgs
0
0
Fork 0
mirror of https://github.com/NixOS/nixpkgs.git synced 2024-11-16 14:54:29 +01:00
Code Issues Projects Releases Packages Wiki Activity Actions 1

julia_04: remove

Browse source
This commit is contained in:
Jörg Thalheim 2018-07-29 10:16:15 +01:00
parent 4b5a809e6e
commit 9bc989b2df
6 changed files with 65 additions and 328 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

203
pkgs/development/compilers/julia/0.6.nix
View file

@ -1,203 +0,0 @@
{ stdenv, fetchurl, fetchzip
# build tools
, gfortran, m4, makeWrapper, patchelf, perl, which, python2
, paxctl
# libjulia dependencies
, libunwind, readline, utf8proc, zlib
, llvm
# standard library dependencies
, curl, fftwSinglePrec, fftw, gmp, libgit2, mpfr, openlibm, openspecfun, pcre2
# linear algebra
, openblas, arpack, suitesparse
# Darwin frameworks
, CoreServices, ApplicationServices
}:
with stdenv.lib;
# All dependencies must use the same OpenBLAS.
let
arpack_ = arpack;
suitesparse_ = suitesparse;
in
let
arpack = arpack_.override { inherit openblas; };
suitesparse = suitesparse_.override { inherit openblas; };
in
let
dsfmtVersion = "2.2.3";
dsfmt = fetchurl {
url = "http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/SFMT/dSFMT-src-${dsfmtVersion}.tar.gz";
sha256 = "03kaqbjbi6viz0n33dk5jlf6ayxqlsq4804n7kwkndiga9s4hd42";
};
libuvVersion = "d8ab1c6a33e77bf155facb54215dd8798e13825d";
libuv = fetchurl {
url = "https://api.github.com/repos/JuliaLang/libuv/tarball/${libuvVersion}";
sha256 = "0q5ahc9dzca2yc6cjbhpfi9nwc4yhhjbgxgsychksn13d24gv7ba";
};
rmathVersion = "0.1";
rmath-julia = fetchurl {
url = "https://api.github.com/repos/JuliaLang/Rmath-julia/tarball/v${rmathVersion}";
sha256 = "1qyps217175qhid46l8f5i1v8i82slgp23ia63x2hzxwfmx8617p";
};
virtualenvVersion = "15.0.0";
virtualenv = fetchurl {
url = "mirror://pypi/v/virtualenv/virtualenv-${virtualenvVersion}.tar.gz";
sha256 = "06fw4liazpx5vf3am45q2pdiwrv0id7ckv7n6zmpml29x6vkzmkh";
};
majorVersion = "0";
minorVersion = "6";
maintenanceVersion = "4";
version = "${majorVersion}.${minorVersion}.${maintenanceVersion}";
in
stdenv.mkDerivation rec {
pname = "julia";
inherit version;
name = "${pname}-${version}";
src = fetchzip {
url = "https://github.com/JuliaLang/${pname}/releases/download/v${version}/${name}.tar.gz";
sha256 = "09axkkj914al7lzvcvhb33hz5wp083lk18llsvrn622fqhmyqabl";
};
prePatch = ''
mkdir deps/srccache
cp "${dsfmt}" "./deps/srccache/dsfmt-${dsfmtVersion}.tar.gz"
cp "${rmath-julia}" "./deps/srccache/Rmath-julia-${rmathVersion}.tar.gz"
cp "${libuv}" "./deps/srccache/libuv-${libuvVersion}.tar.gz"
cp "${virtualenv}" "./deps/srccache/virtualenv-${virtualenvVersion}.tar.gz"
'';
patches = [
./0001.1-use-system-utf8proc.patch
./0002-use-system-suitesparse.patch
] ++ stdenv.lib.optional stdenv.needsPax ./0004-hardened.patch;
postPatch = ''
patchShebangs . contrib
for i in backtrace replutil cmdlineargs compile; do
mv test/$i.jl{,.off}
touch test/$i.jl
done
sed -e 's/Invalid Content-Type:/invalid Content-Type:/g' -i test/libgit2.jl
sed -e 's/Failed to resolve /failed to resolve /g' -i test/libgit2.jl
'';
buildInputs = [
arpack fftw fftwSinglePrec gmp libgit2 libunwind mpfr
pcre2.dev openblas openlibm openspecfun readline suitesparse utf8proc
zlib llvm
]
++ stdenv.lib.optionals stdenv.isDarwin [CoreServices ApplicationServices]
;
nativeBuildInputs = [ curl gfortran m4 makeWrapper patchelf perl python2 which ]
++ stdenv.lib.optional stdenv.needsPax paxctl;
makeFlags =
let
arch = head (splitString "-" stdenv.system);
march = { "x86_64" = "x86-64"; "i686" = "pentium4"; }."${arch}"
or (throw "unsupported architecture: ${arch}");
# Julia requires Pentium 4 (SSE2) or better
cpuTarget = { "x86_64" = "x86-64"; "i686" = "pentium4"; }."${arch}"
or (throw "unsupported architecture: ${arch}");
in [
"ARCH=${arch}"
"MARCH=${march}"
"JULIA_CPU_TARGET=${cpuTarget}"
"PREFIX=$(out)"
"prefix=$(out)"
"SHELL=${stdenv.shell}"
"USE_SYSTEM_BLAS=1"
"USE_BLAS64=${if openblas.blas64 then "1" else "0"}"
"LIBBLAS=-lopenblas"
"LIBBLASNAME=libopenblas"
"USE_SYSTEM_LAPACK=1"
"LIBLAPACK=-lopenblas"
"LIBLAPACKNAME=libopenblas"
"USE_SYSTEM_SUITESPARSE=1"
"SUITESPARSE_LIB=-lsuitesparse"
"SUITESPARSE_INC=-I${suitesparse}/include"
"USE_SYSTEM_ARPACK=1"
"USE_SYSTEM_FFTW=1"
"USE_SYSTEM_GMP=1"
"USE_SYSTEM_LIBGIT2=1"
"USE_SYSTEM_LIBUNWIND=1"
"USE_SYSTEM_LLVM=1"
"LLVM_VER=3.9.1"
"USE_SYSTEM_MPFR=1"
"USE_SYSTEM_OPENLIBM=1"
"USE_SYSTEM_OPENSPECFUN=1"
"USE_SYSTEM_PATCHELF=1"
"USE_SYSTEM_PCRE=1"
"PCRE_CONFIG=${pcre2.dev}/bin/pcre2-config"
"PCRE_INCL_PATH=${pcre2.dev}/include/pcre2.h"
"USE_SYSTEM_READLINE=1"
"USE_SYSTEM_UTF8PROC=1"
"USE_SYSTEM_ZLIB=1"
];
NIX_CFLAGS_COMPILE = [ "-fPIC" ];
LD_LIBRARY_PATH = makeLibraryPath [
arpack fftw fftwSinglePrec gmp libgit2 mpfr openblas openlibm
openspecfun pcre2 suitesparse llvm
];
dontStrip = true;
dontPatchELF = true;
enableParallelBuilding = true;
doCheck = !stdenv.isDarwin;
checkTarget = "testall";
# Julia's tests require read/write access to $HOME
preCheck = ''
export HOME="$NIX_BUILD_TOP"
'';
preBuild = ''
sed -e '/^install:/s@[^ ]*/doc/[^ ]*@@' -i Makefile
sed -e '/[$](DESTDIR)[$](docdir)/d' -i Makefile
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}
'';
postInstall = ''
# Symlink shared libraries from LD_LIBRARY_PATH into lib/julia,
# as using a wrapper with LD_LIBRARY_PATH causes segmentation
# faults when program returns an error:
# $ julia -e 'throw(Error())'
find $(echo $LD_LIBRARY_PATH | sed 's|:| |g') -maxdepth 1 -name '*.${if stdenv.isDarwin then "dylib" else "so"}*' | while read lib; do
if [[ ! -e $out/lib/julia/$(basename $lib) ]]; then
ln -sv $lib $out/lib/julia/$(basename $lib)
fi
done
'';
passthru = {
inherit majorVersion minorVersion maintenanceVersion;
site = "share/julia/site/v${majorVersion}.${minorVersion}";
};
meta = {
description = "High-level performance-oriented dynamical language for technical computing";
homepage = https://julialang.org/;
license = stdenv.lib.licenses.mit;
maintainers = with stdenv.lib.maintainers; [ raskin ];
platforms = [ "i686-linux" "x86_64-linux" "x86_64-darwin" ];
broken = stdenv.isi686;
};
}

29
pkgs/development/compilers/julia/0001-use-system-utf8proc.patch
View file

@ -1,29 +0,0 @@
From 54a66b5728ec98f44a1768f064509be4fd3f2ef6 Mon Sep 17 00:00:00 2001
From: Thomas Tuegel <ttuegel@gmail.com>
Date: Sat, 10 Oct 2015 13:09:48 -0500
Subject: [PATCH 1/3] use system utf8proc
---
src/flisp/Makefile | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/flisp/Makefile b/src/flisp/Makefile
index bec8624..5437b5c 100644
--- a/src/flisp/Makefile
+++ b/src/flisp/Makefile
@@ -24,9 +24,9 @@ DOBJS = $(SRCS:%.c=$(BUILDDIR)/%.dbg.obj)
LLTDIR = ../support
LLT_release = $(BUILDDIR)/$(LLTDIR)/libsupport.a
LLT_debug = $(BUILDDIR)/$(LLTDIR)/libsupport-debug.a
-LIBFILES_release = $(LLT_release) $(LIBUV) $(LIBUTF8PROC)
-LIBFILES_debug = $(LLT_debug) $(LIBUV) $(LIBUTF8PROC)
-LIBS =
+LIBFILES_release = $(LLT_release) $(LIBUV)
+LIBFILES_debug = $(LLT_debug) $(LIBUV)
+LIBS = $(LIBUTF8PROC)
ifneq ($(OS),WINNT)
LIBS += -lpthread
endif
--
2.5.2

29
pkgs/development/compilers/julia/0003-no-ldconfig.patch
View file

@ -1,29 +0,0 @@
From 8802fe583eda93a928739cb3bc3517e19d1a6fa1 Mon Sep 17 00:00:00 2001
From: Thomas Tuegel <ttuegel@gmail.com>
Date: Sun, 11 Oct 2015 07:19:42 -0500
Subject: [PATCH 3/3] no ldconfig
---
src/ccall.cpp | 6 +-----
1 file changed, 1 insertion(+), 5 deletions(-)
diff --git a/src/ccall.cpp b/src/ccall.cpp
index 22015ff..2821192 100644
--- a/src/ccall.cpp
+++ b/src/ccall.cpp
@@ -13,11 +13,7 @@ extern "C" DLLEXPORT void jl_read_sonames(void)
{
char *line=NULL;
size_t sz=0;
-#if defined(__linux__)
- FILE *ldc = popen("/sbin/ldconfig -p", "r");
-#else
- FILE *ldc = popen("/sbin/ldconfig -r", "r");
-#endif
+ FILE *ldc = popen("true", "r");
if (ldc == NULL) return; // ignore errors in running ldconfig (other than whatever might have been printed to stderr)
while (!feof(ldc)) {
--
2.5.2

25
pkgs/development/compilers/julia/0004-hardened-0.4.7.patch
View file

@ -1,25 +0,0 @@
From 0bdbe60325a22202f8e250a9578407648a0d29b9 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Wed, 1 Feb 2017 06:09:49 -0600
Subject: [PATCH] Set pax flags on julia binaries to disable memory protection.
---
Makefile | 2 ++
1 file changed, 2 insertions(+)
diff --git a/Makefile b/Makefile
index 8d45a1baa..91ea33b21 100644
--- a/Makefile
+++ b/Makefile
@@ -61,6 +61,8 @@ julia-src-release julia-src-debug : julia-src-% : julia-deps
julia-ui-release julia-ui-debug : julia-ui-% : julia-src-%
@$(MAKE) $(QUIET_MAKE) -C ui julia-$*
+ @echo "setting PaX flags on $(JULIA_EXECUTABLE_$*)"
+ @paxctl -czexm $(JULIA_EXECUTABLE_$*)
julia-inference : julia-base julia-ui-$(JULIA_BUILD_MODE) $(build_prefix)/.examples
@$(MAKE) $(QUIET_MAKE) $(build_private_libdir)/inference.ji JULIA_BUILD_MODE=$(JULIA_BUILD_MODE)
--
2.11.0

96
pkgs/development/compilers/julia/default.nix
View file

@ -1,8 +1,9 @@
{ stdenv, fetchurl
{ stdenv, fetchurl, fetchzip
# build tools
, gfortran, m4, makeWrapper, patchelf, perl, which, python2, paxctl
# libjulia dependencies
, libunwind, llvm, readline, utf8proc, zlib
, libunwind, readline, utf8proc, zlib
, llvm
# standard library dependencies
, curl, fftwSinglePrec, fftw, gmp, libgit2, mpfr, openlibm, openspecfun, pcre2
# linear algebra
@ -21,9 +22,6 @@ in
let
arpack = arpack_.override { inherit openblas; };
suitesparse = suitesparse_.override { inherit openblas; };
llvmShared = if stdenv.isDarwin
then llvm.override { enableSharedLibraries = true; }
else llvm;
in
let
@ -33,10 +31,10 @@ let
sha256 = "03kaqbjbi6viz0n33dk5jlf6ayxqlsq4804n7kwkndiga9s4hd42";
};
libuvVersion = "efb40768b7c7bd9f173a7868f74b92b1c5a61a0e";
libuvVersion = "d8ab1c6a33e77bf155facb54215dd8798e13825d";
libuv = fetchurl {
url = "https://api.github.com/repos/JuliaLang/libuv/tarball/${libuvVersion}";
sha256 = "1znkxyv1cy9pjap7afypipzsn04533ni3pqjd191fdgw2sv9cal7";
sha256 = "0q5ahc9dzca2yc6cjbhpfi9nwc4yhhjbgxgsychksn13d24gv7ba";
};
rmathVersion = "0.1";
@ -44,40 +42,59 @@ let
url = "https://api.github.com/repos/JuliaLang/Rmath-julia/tarball/v${rmathVersion}";
sha256 = "1qyps217175qhid46l8f5i1v8i82slgp23ia63x2hzxwfmx8617p";
};
virtualenvVersion = "15.0.0";
virtualenv = fetchurl {
url = "mirror://pypi/v/virtualenv/virtualenv-${virtualenvVersion}.tar.gz";
sha256 = "06fw4liazpx5vf3am45q2pdiwrv0id7ckv7n6zmpml29x6vkzmkh";
};
majorVersion = "0";
minorVersion = "6";
maintenanceVersion = "4";
version = "${majorVersion}.${minorVersion}.${maintenanceVersion}";
in
stdenv.mkDerivation rec {
pname = "julia";
version = "0.4.7";
inherit version;
name = "${pname}-${version}";
src = fetchurl {
src = fetchzip {
url = "https://github.com/JuliaLang/${pname}/releases/download/v${version}/${name}.tar.gz";
sha256 = "09f531jhs8pyd1xng5c26x994w7q0sxxr28mr3qfw9wpkbmsc2pf";
sha256 = "09axkkj914al7lzvcvhb33hz5wp083lk18llsvrn622fqhmyqabl";
};
prePatch = ''
cp "${dsfmt}" "./deps/dsfmt-${dsfmtVersion}.tar.gz"
cp "${rmath-julia}" "./deps/Rmath-julia-${rmathVersion}.tar.gz"
cp "${libuv}" "./deps/libuv-${libuvVersion}.tar.gz"
mkdir deps/srccache
cp "${dsfmt}" "./deps/srccache/dsfmt-${dsfmtVersion}.tar.gz"
cp "${rmath-julia}" "./deps/srccache/Rmath-julia-${rmathVersion}.tar.gz"
cp "${libuv}" "./deps/srccache/libuv-${libuvVersion}.tar.gz"
cp "${virtualenv}" "./deps/srccache/virtualenv-${virtualenvVersion}.tar.gz"
'';
patches = [
./0001-use-system-utf8proc.patch
./0001.1-use-system-utf8proc.patch
./0002-use-system-suitesparse.patch
./0003-no-ldconfig.patch
] ++ stdenv.lib.optional stdenv.needsPax ./0004-hardened-0.4.7.patch;
] ++ stdenv.lib.optional stdenv.needsPax ./0004-hardened.patch;
postPatch = ''
patchShebangs . contrib
for i in backtrace replutil cmdlineargs compile; do
mv test/$i.jl{,.off}
touch test/$i.jl
done
sed -e 's/Invalid Content-Type:/invalid Content-Type:/g' -i test/libgit2.jl
sed -e 's/Failed to resolve /failed to resolve /g' -i test/libgit2.jl
'';
buildInputs = [
arpack fftw fftwSinglePrec gmp libgit2 libunwind llvmShared mpfr
arpack fftw fftwSinglePrec gmp libgit2 libunwind mpfr
pcre2.dev openblas openlibm openspecfun readline suitesparse utf8proc
zlib
] ++
stdenv.lib.optionals stdenv.isDarwin [CoreServices ApplicationServices] ;
zlib llvm
]
++ stdenv.lib.optionals stdenv.isDarwin [CoreServices ApplicationServices]
;
nativeBuildInputs = [ curl gfortran m4 makeWrapper patchelf perl python2 which ]
++ stdenv.lib.optional stdenv.needsPax paxctl;
@ -85,7 +102,7 @@ stdenv.mkDerivation rec {
makeFlags =
let
arch = head (splitString "-" stdenv.system);
march = { "x86_64" = "x86-64"; "i686" = "i686"; }."${arch}"
march = { "x86_64" = "x86-64"; "i686" = "pentium4"; }."${arch}"
or (throw "unsupported architecture: ${arch}");
# Julia requires Pentium 4 (SSE2) or better
cpuTarget = { "x86_64" = "x86-64"; "i686" = "pentium4"; }."${arch}"
@ -116,7 +133,10 @@ stdenv.mkDerivation rec {
"USE_SYSTEM_GMP=1"
"USE_SYSTEM_LIBGIT2=1"
"USE_SYSTEM_LIBUNWIND=1"
"USE_SYSTEM_LLVM=1"
"LLVM_VER=3.9.1"
"USE_SYSTEM_MPFR=1"
"USE_SYSTEM_OPENLIBM=1"
"USE_SYSTEM_OPENSPECFUN=1"
@ -133,38 +153,50 @@ stdenv.mkDerivation rec {
LD_LIBRARY_PATH = makeLibraryPath [
arpack fftw fftwSinglePrec gmp libgit2 mpfr openblas openlibm
openspecfun pcre2 suitesparse
openspecfun pcre2 suitesparse llvm
];
NIX_LDFLAGS = optionalString stdenv.isDarwin "-rpath ${llvmShared}/lib";
dontStrip = true;
dontPatchELF = true;
enableParallelBuilding = true;
doCheck = true;
doCheck = !stdenv.isDarwin;
checkTarget = "testall";
# Julia's tests require read/write access to $HOME
preCheck = ''
export HOME="$NIX_BUILD_TOP"
'';
preBuild = ''
sed -e '/^install:/s@[^ ]*/doc/[^ ]*@@' -i Makefile
sed -e '/[$](DESTDIR)[$](docdir)/d' -i Makefile
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}
'';
postInstall = ''
for prog in "$out/bin/julia" "$out/bin/julia-debug"; do
wrapProgram "$prog" \
--prefix LD_LIBRARY_PATH : "$LD_LIBRARY_PATH" \
--prefix PATH : "${stdenv.lib.makeBinPath [ curl ]}"
# Symlink shared libraries from LD_LIBRARY_PATH into lib/julia,
# as using a wrapper with LD_LIBRARY_PATH causes segmentation
# faults when program returns an error:
# $ julia -e 'throw(Error())'
find $(echo $LD_LIBRARY_PATH | sed 's|:| |g') -maxdepth 1 -name '*.${if stdenv.isDarwin then "dylib" else "so"}*' | while read lib; do
if [[ ! -e $out/lib/julia/$(basename $lib) ]]; then
ln -sv $lib $out/lib/julia/$(basename $lib)
fi
done
'';
passthru = {
inherit majorVersion minorVersion maintenanceVersion;
site = "share/julia/site/v${majorVersion}.${minorVersion}";
};
meta = {
description = "High-level performance-oriented dynamical language for technical computing";
homepage = https://julialang.org/;
license = stdenv.lib.licenses.mit;
maintainers = with stdenv.lib.maintainers; [ raskin ];
platforms = [ "i686-linux" "x86_64-linux" "x86_64-darwin" ];
#broken = stdenv.isi686;
broken = true; # 2018-04-10
broken = stdenv.isi686;
};
}

11
pkgs/top-level/all-packages.nix
View file

@ -6799,14 +6799,7 @@ with pkgs;
jikes = callPackage ../development/compilers/jikes { };
julia_04 = callPackage ../development/compilers/julia {
gmp = gmp6;
openblas = openblasCompat;
inherit (darwin.apple_sdk.frameworks) CoreServices ApplicationServices;
llvm = llvm_37;
};
julia_06 = callPackage ../development/compilers/julia/0.6.nix {
julia = callPackage ../development/compilers/julia {
gmp = gmp6;
openblas = openblasCompat;
inherit (darwin.apple_sdk.frameworks) CoreServices ApplicationServices;
@ -6820,8 +6813,6 @@ with pkgs;
llvm = llvm_39;
});
julia = julia_06;
jwasm = callPackage ../development/compilers/jwasm { };
kotlin = callPackage ../development/compilers/kotlin { };