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Merge pull request #63127 from bzizou/trimal

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trimal: init at 1.4.1
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Lassulus 2019-08-31 13:04:41 +02:00 committed by GitHub
commit a8d26fc34a
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2 changed files with 33 additions and 0 deletions
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31
pkgs/applications/science/biology/trimal/default.nix Executable file
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@ -0,0 +1,31 @@
{ stdenv, fetchFromGitHub }:
stdenv.mkDerivation rec {
pname = "trimal";
version = "1.4.1";
src = fetchFromGitHub {
repo = pname;
owner = "scapella";
rev = "v${version}";
sha256 = "0isc7s3514di4z953xq53ncjkbi650sh4q9yyw5aag1n9hqnh7k0";
};
postUnpack = ''
sourceRoot=''${sourceRoot}/source
echo Source root reset to ''${sourceRoot}
'';
installPhase = ''
mkdir -p $out/bin
cp -a trimal readal statal $out/bin
'';
meta = with stdenv.lib; {
description = "A tool for the automated removal of spurious sequences or poorly aligned regions from a multiple sequence alignment";
license = licenses.gpl3;
platforms = platforms.linux;
homepage = http://trimal.cgenomics.org;
maintainers = [ maintainers.bzizou ];
};
}

2
pkgs/top-level/all-packages.nix
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@ -22938,6 +22938,8 @@ in
seaview = callPackage ../applications/science/biology/seaview { };
trimal = callPackage ../applications/science/biology/trimal { };
varscan = callPackage ../applications/science/biology/varscan { };
hmmer = callPackage ../applications/science/biology/hmmer { };