MirrorHub/nixpkgs
0
0
Fork 0
mirror of https://github.com/NixOS/nixpkgs.git synced 2024-11-17 15:22:59 +01:00
Code Issues Projects Releases Packages Wiki Activity Actions 2

pythonPackages.cnvkit: init at 0.9.6

Browse source
This commit is contained in:
Justin Bedo 2019-06-19 13:26:26 +10:00 committed by Dmitry Kalinkin
parent 4bb197f4b2
commit f889214bc1
No known key found for this signature in database
GPG key ID: 5157B3EC8B2CA333
2 changed files with 50 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

48
pkgs/development/python-modules/cnvkit/default.nix Normal file
View file

@ -0,0 +1,48 @@
{ lib
, fetchPypi
, rPackages
, rWrapper
, buildPythonPackage
, biopython
, numpy
, scipy
, pandas
, matplotlib
, reportlab
, pysam
, future
, pillow
, pomegranate
, pyfaidx
}:
buildPythonPackage rec {
pname = "CNVkit";
version = "0.9.6";
src = fetchPypi {
inherit pname version;
sha256 = "1hj8c98s538i0hg5mrz4bw4v07qmcl51rhxq611rj2nglnc9r25y";
};
propagatedBuildInputs = [
biopython
numpy
scipy
pandas
matplotlib
reportlab
pyfaidx
pysam
future
pillow
pomegranate
];
meta = with lib; {
homepage = "https://cnvkit.readthedocs.io";
description = "A Python library and command-line software toolkit to infer and visualize copy number from high-throughput DNA sequencing data";
license = licenses.asl20;
maintainers = [ maintainers.jbedo ];
};
}

2
pkgs/top-level/python-packages.nix
View file

@ -346,6 +346,8 @@ in {
clustershell = callPackage ../development/python-modules/clustershell { };
cnvkit = callPackage ../development/python-modules/cnvkit { };
cozy = callPackage ../development/python-modules/cozy { };
curio = callPackage ../development/python-modules/curio { };