# Copyright (c) 2019, NVIDIA CORPORATION. All rights reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # pylint: enable=line-too-long from __future__ import absolute_import from __future__ import division from __future__ import print_function import logging import math import os import pickle import shutil import horovod.tensorflow as hvd import tensorflow as tf import dllogger as DLLogger from dllogger import StdOutBackend, JSONStreamBackend, Verbosity from hooks.profiling_hook import ProfilingHook from hooks.train_hook import TrainHook from utils.cmd_util import PARSER from utils.data_loader import MSDDataset from utils.model_fn import vnet_v2 def main(_): tf.get_logger().setLevel(logging.ERROR) hvd.init() FLAGS = PARSER.parse_args() backends = [] if hvd.rank() == 0: backends += [StdOutBackend(Verbosity.DEFAULT)] if FLAGS.log_dir: backends += [JSONStreamBackend(Verbosity.DEFAULT, FLAGS.log_dir)] DLLogger.init(backends=backends) for key in vars(FLAGS): DLLogger.log(step="PARAMETER", data={str(key): vars(FLAGS)[key]}) os.environ['CUDA_CACHE_DISABLE'] = '0' os.environ['HOROVOD_GPU_ALLREDUCE'] = 'NCCL' os.environ['TF_CPP_MIN_LOG_LEVEL'] = '3' os.environ['TF_GPU_THREAD_MODE'] = 'gpu_private' os.environ['TF_USE_CUDNN_BATCHNORM_SPATIAL_PERSISTENT'] = '1' os.environ['TF_ADJUST_HUE_FUSED'] = '1' os.environ['TF_ADJUST_SATURATION_FUSED'] = '1' os.environ['TF_ENABLE_WINOGRAD_NONFUSED'] = '1' os.environ['TF_SYNC_ON_FINISH'] = '0' os.environ['TF_AUTOTUNE_THRESHOLD'] = '2' os.environ['TF_DISABLE_NVTX_RANGES'] = '1' dataset = MSDDataset(json_path=os.path.join(FLAGS.data_dir, 'dataset.json'), dst_size=FLAGS.input_shape, seed=FLAGS.seed, interpolator=FLAGS.resize_interpolator, data_normalization=FLAGS.data_normalization, batch_size=FLAGS.batch_size, train_split=FLAGS.train_split, split_seed=FLAGS.split_seed) FLAGS.labels = dataset.labels gpu_options = tf.GPUOptions() config = tf.ConfigProto(gpu_options=gpu_options, allow_soft_placement=True) if FLAGS.use_xla: config.graph_options.optimizer_options.global_jit_level = tf.OptimizerOptions.ON_1 config.gpu_options.allow_growth = True config.gpu_options.visible_device_list = str(hvd.local_rank()) if FLAGS.use_amp: config.graph_options.rewrite_options.auto_mixed_precision = 1 run_config = tf.estimator.RunConfig( save_summary_steps=None, save_checkpoints_steps=None if FLAGS.benchmark else dataset.train_steps * FLAGS.train_epochs, save_checkpoints_secs=None, tf_random_seed=None, session_config=config, keep_checkpoint_max=1) estimator = tf.estimator.Estimator( model_fn=vnet_v2, model_dir=FLAGS.model_dir if hvd.rank() == 0 else None, config=run_config, params=FLAGS) train_hooks = [hvd.BroadcastGlobalVariablesHook(0)] if 'train' in FLAGS.exec_mode: steps = dataset.train_steps * FLAGS.train_epochs if FLAGS.benchmark: steps = FLAGS.warmup_steps * 2 if hvd.rank() == 0: train_hooks += [ProfilingHook(FLAGS.warmup_steps, FLAGS.batch_size * hvd.size(), DLLogger)] else: if hvd.rank() == 0: train_hooks += [TrainHook(FLAGS.log_every, DLLogger)] estimator.train( input_fn=lambda: dataset.train_fn(FLAGS.augment), steps=steps, hooks=train_hooks) if 'evaluate' in FLAGS.exec_mode: if hvd.rank() == 0: if FLAGS.train_split >= 1.0: raise ValueError("Missing argument: --train_split < 1.0") result = estimator.evaluate( input_fn=dataset.eval_fn, steps=dataset.eval_steps, hooks=[]) DLLogger.log(step=tuple(), data={'background_dice': str(result['background dice']), 'anterior_dice': str(result['Anterior dice']), 'posterior_dice': str(result['Posterior dice'])}) if 'predict' in FLAGS.exec_mode: count = 1 hooks = [] if hvd.rank() == 0: if FLAGS.benchmark: count = math.ceil((FLAGS.warmup_steps * 2) / dataset.test_steps) hooks += [ProfilingHook(FLAGS.warmup_steps, FLAGS.batch_size * hvd.size(), DLLogger, training=False)] predictions = estimator.predict(input_fn=lambda: dataset.test_fn(count=count), hooks=hooks) pred = [p['prediction'] for p in predictions] predict_path = os.path.join(FLAGS.model_dir, 'predictions') if os.path.exists(predict_path): shutil.rmtree(predict_path) os.makedirs(predict_path) pickle.dump(pred, open(os.path.join(predict_path, 'predictions.pkl'), 'wb')) if __name__ == '__main__': tf.compat.v1.app.run()