19 lines
798 B
Bash
Executable file
19 lines
798 B
Bash
Executable file
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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# SOFTWARE.
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WDIR=$1
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CPU=$2
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MEM=$3
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DB="$4/pdb100_2021Mar03/pdb100_2021Mar03"
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HH="hhsearch -b 50 -B 500 -z 50 -Z 500 -mact 0.05 -cpu $CPU -maxmem $MEM -aliw 100000 -e 100 -p 5.0 -d $DB"
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cat $WDIR/t000_.ss2 $WDIR/t000_.msa0.a3m > $WDIR/t000_.msa0.ss2.a3m
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$HH -i $WDIR/t000_.msa0.ss2.a3m -o $WDIR/t000_.hhr -atab $WDIR/t000_.atab -v 0
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