34 lines
1.5 KiB
Bash
34 lines
1.5 KiB
Bash
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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# SOFTWARE.
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WEIGHTS_DIR="${1:-.}"
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DATABASES_DIR="${2:-./databases}"
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mkdir -p $DATABASES_DIR
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echo "Downloading pre-trained model weights [1G]"
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wget https://files.ipd.uw.edu/pub/RoseTTAFold/weights.tar.gz
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tar xfz weights.tar.gz -C $WEIGHTS_DIR
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# uniref30 [46G]
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echo "Downloading UniRef30_2020_06 [46G]"
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wget http://wwwuser.gwdg.de/~compbiol/uniclust/2020_06/UniRef30_2020_06_hhsuite.tar.gz -P $DATABASES_DIR
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mkdir -p $DATABASES_DIR/UniRef30_2020_06
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tar xfz $DATABASES_DIR/UniRef30_2020_06_hhsuite.tar.gz -C $DATABASES_DIR/UniRef30_2020_06
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# BFD [272G]
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#wget https://bfd.mmseqs.com/bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt.tar.gz
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#mkdir -p bfd
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#tar xfz bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt.tar.gz -C ./bfd
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# structure templates (including *_a3m.ffdata, *_a3m.ffindex) [over 100G]
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echo "Downloading pdb100_2021Mar03 [over 100G]"
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wget https://files.ipd.uw.edu/pub/RoseTTAFold/pdb100_2021Mar03.tar.gz -P $DATABASES_DIR
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tar xfz $DATABASES_DIR/pdb100_2021Mar03.tar.gz -C $DATABASES_DIR/
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