DeepLearningExamples/DGLPyTorch/DrugDiscovery/SE3Transformer/tests/test_equivariance.py
2021-11-02 15:06:21 +01:00

107 lines
3.7 KiB
Python

# Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved.
#
# Permission is hereby granted, free of charge, to any person obtaining a
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# Software is furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
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# SPDX-FileCopyrightText: Copyright (c) 2021 NVIDIA CORPORATION & AFFILIATES
# SPDX-License-Identifier: MIT
import torch
from se3_transformer.model import SE3Transformer
from se3_transformer.model.fiber import Fiber
if __package__ is None or __package__ == '':
from utils import get_random_graph, assign_relative_pos, get_max_diff, rot
else:
from .utils import get_random_graph, assign_relative_pos, get_max_diff, rot
# Tolerances for equivariance error abs( f(x) @ R - f(x @ R) )
TOL = 1e-3
CHANNELS, NODES = 32, 512
def _get_outputs(model, R):
feats0 = torch.randn(NODES, CHANNELS, 1)
feats1 = torch.randn(NODES, CHANNELS, 3)
coords = torch.randn(NODES, 3)
graph = get_random_graph(NODES)
if torch.cuda.is_available():
feats0 = feats0.cuda()
feats1 = feats1.cuda()
R = R.cuda()
coords = coords.cuda()
graph = graph.to('cuda')
model.cuda()
graph1 = assign_relative_pos(graph, coords)
out1 = model(graph1, {'0': feats0, '1': feats1}, {})
graph2 = assign_relative_pos(graph, coords @ R)
out2 = model(graph2, {'0': feats0, '1': feats1 @ R}, {})
return out1, out2
def _get_model(**kwargs):
return SE3Transformer(
num_layers=4,
fiber_in=Fiber.create(2, CHANNELS),
fiber_hidden=Fiber.create(3, CHANNELS),
fiber_out=Fiber.create(2, CHANNELS),
fiber_edge=Fiber({}),
num_heads=8,
channels_div=2,
**kwargs
)
def test_equivariance():
model = _get_model()
R = rot(*torch.rand(3))
if torch.cuda.is_available():
R = R.cuda()
out1, out2 = _get_outputs(model, R)
assert torch.allclose(out2['0'], out1['0'], atol=TOL), \
f'type-0 features should be invariant {get_max_diff(out1["0"], out2["0"])}'
assert torch.allclose(out2['1'], (out1['1'] @ R), atol=TOL), \
f'type-1 features should be equivariant {get_max_diff(out1["1"] @ R, out2["1"])}'
def test_equivariance_pooled():
model = _get_model(pooling='avg', return_type=1)
R = rot(*torch.rand(3))
if torch.cuda.is_available():
R = R.cuda()
out1, out2 = _get_outputs(model, R)
assert torch.allclose(out2, (out1 @ R), atol=TOL), \
f'type-1 features should be equivariant {get_max_diff(out1 @ R, out2)}'
def test_invariance_pooled():
model = _get_model(pooling='avg', return_type=0)
R = rot(*torch.rand(3))
if torch.cuda.is_available():
R = R.cuda()
out1, out2 = _get_outputs(model, R)
assert torch.allclose(out2, out1, atol=TOL), \
f'type-0 features should be invariant {get_max_diff(out1, out2)}'