DeepLearningExamples/TensorFlow/Segmentation/UNet_3D_Medical/runtime/setup.py
Przemek Strzelczyk 79d4ced0be Adding 3DUnet/TF
2020-07-04 03:28:33 +02:00

85 lines
2.9 KiB
Python

# Copyright (c) 2020, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import os
import pickle
import shutil
import dllogger as logger
import tensorflow as tf
import horovod.tensorflow as hvd
from dllogger import StdOutBackend, Verbosity, JSONStreamBackend
from model.model_fn import unet_3d
def set_flags():
os.environ['TF_CPP_MIN_LOG_LEVEL'] = '3'
os.environ['CUDA_CACHE_DISABLE'] = '1'
os.environ['HOROVOD_GPU_ALLREDUCE'] = 'NCCL'
os.environ['TF_GPU_THREAD_MODE'] = 'gpu_private'
os.environ['TF_USE_CUDNN_BATCHNORM_SPATIAL_PERSISTENT'] = '0'
os.environ['TF_ADJUST_HUE_FUSED'] = '1'
os.environ['TF_ADJUST_SATURATION_FUSED'] = '1'
os.environ['TF_ENABLE_WINOGRAD_NONFUSED'] = '1'
os.environ['TF_SYNC_ON_FINISH'] = '0'
def prepare_model_dir(params):
model_dir = os.path.join(params.model_dir, "model_chckpt")
model_dir = model_dir if (hvd.rank() == 0 and not params.benchmark) else None
if model_dir is not None:
os.makedirs(model_dir, exist_ok=True)
if ('train' in params.exec_mode) and (not params.resume_training):
os.system('rm -rf {}/*'.format(model_dir))
return model_dir
def build_estimator(params, model_dir):
config = tf.compat.v1.ConfigProto(gpu_options=tf.compat.v1.GPUOptions(), allow_soft_placement=True)
if params.use_xla:
config.graph_options.optimizer_options.global_jit_level = tf.OptimizerOptions.ON_1
config.gpu_options.allow_growth = True
config.gpu_options.visible_device_list = str(hvd.local_rank())
if params.use_amp:
config.graph_options.rewrite_options.auto_mixed_precision = 1
checkpoint_steps = (params.max_steps // hvd.size()) if hvd.rank() == 0 else None
checkpoint_steps = checkpoint_steps if not params.benchmark else None
run_config = tf.estimator.RunConfig(
save_summary_steps=params.max_steps,
session_config=config,
save_checkpoints_steps=checkpoint_steps,
keep_checkpoint_max=1)
return tf.estimator.Estimator(
model_fn=unet_3d,
model_dir=model_dir,
config=run_config,
params=params)
def get_logger(params):
backends = []
if hvd.rank() == 0:
backends += [StdOutBackend(Verbosity.VERBOSE)]
if params.log_dir:
backends += [JSONStreamBackend(Verbosity.VERBOSE, params.log_dir)]
logger.init(backends=backends)
return logger