diff --git a/changelog.d/3496.feature b/changelog.d/3496.feature
new file mode 100644
index 0000000000..6a06a7e755
--- /dev/null
+++ b/changelog.d/3496.feature
@@ -0,0 +1 @@
+Include CPU time from database threads in request/block metrics.
diff --git a/synapse/storage/_base.py b/synapse/storage/_base.py
index 1fd5d8f162..98dde77431 100644
--- a/synapse/storage/_base.py
+++ b/synapse/storage/_base.py
@@ -220,7 +220,7 @@ class SQLBaseStore(object):
         self._clock.looping_call(loop, 10000)
 
     def _new_transaction(self, conn, desc, after_callbacks, exception_callbacks,
-                         logging_context, func, *args, **kwargs):
+                         func, *args, **kwargs):
         start = time.time()
         txn_id = self._TXN_ID
 
@@ -284,8 +284,7 @@ class SQLBaseStore(object):
             end = time.time()
             duration = end - start
 
-            if logging_context is not None:
-                logging_context.add_database_transaction(duration)
+            LoggingContext.current_context().add_database_transaction(duration)
 
             transaction_logger.debug("[TXN END] {%s} %f sec", name, duration)
 
@@ -309,19 +308,15 @@ class SQLBaseStore(object):
         Returns:
             Deferred: The result of func
         """
-        current_context = LoggingContext.current_context()
-
         after_callbacks = []
         exception_callbacks = []
 
-        def inner_func(conn, *args, **kwargs):
-            return self._new_transaction(
-                conn, desc, after_callbacks, exception_callbacks, current_context,
-                func, *args, **kwargs
-            )
-
         try:
-            result = yield self.runWithConnection(inner_func, *args, **kwargs)
+            result = yield self.runWithConnection(
+                self._new_transaction,
+                desc, after_callbacks, exception_callbacks, func,
+                *args, **kwargs
+            )
 
             for after_callback, after_args, after_kwargs in after_callbacks:
                 after_callback(*after_args, **after_kwargs)
@@ -346,22 +341,25 @@ class SQLBaseStore(object):
         Returns:
             Deferred: The result of func
         """
-        current_context = LoggingContext.current_context()
+        parent_context = LoggingContext.current_context()
+        if parent_context == LoggingContext.sentinel:
+            logger.warn(
+                "Running db txn from sentinel context: metrics will be lost",
+            )
+            parent_context = None
 
         start_time = time.time()
 
         def inner_func(conn, *args, **kwargs):
-            with LoggingContext("runWithConnection") as context:
+            with LoggingContext("runWithConnection", parent_context) as context:
                 sched_duration_sec = time.time() - start_time
                 sql_scheduling_timer.observe(sched_duration_sec)
-                current_context.add_database_scheduled(sched_duration_sec)
+                context.add_database_scheduled(sched_duration_sec)
 
                 if self.database_engine.is_connection_closed(conn):
                     logger.debug("Reconnecting closed database connection")
                     conn.reconnect()
 
-                current_context.copy_to(context)
-
                 return func(conn, *args, **kwargs)
 
         with PreserveLoggingContext():
diff --git a/synapse/storage/events_worker.py b/synapse/storage/events_worker.py
index fa2659403d..67433606c6 100644
--- a/synapse/storage/events_worker.py
+++ b/synapse/storage/events_worker.py
@@ -261,7 +261,8 @@ class EventsWorkerStore(SQLBaseStore):
                 ]
 
                 rows = self._new_transaction(
-                    conn, "do_fetch", [], [], None, self._fetch_event_rows, event_ids
+                    conn, "do_fetch", [], [],
+                    self._fetch_event_rows, event_ids,
                 )
 
                 row_dict = {
diff --git a/synapse/util/logcontext.py b/synapse/util/logcontext.py
index 44a0a56818..f6c7175f74 100644
--- a/synapse/util/logcontext.py
+++ b/synapse/util/logcontext.py
@@ -137,12 +137,18 @@ class LoggingContext(object):
     """Additional context for log formatting. Contexts are scoped within a
     "with" block.
 
+    If a parent is given when creating a new context, then:
+        - logging fields are copied from the parent to the new context on entry
+        - when the new context exits, the cpu usage stats are copied from the
+          child to the parent
+
     Args:
         name (str): Name for the context for debugging.
+        parent_context (LoggingContext|None): The parent of the new context
     """
 
     __slots__ = [
-        "previous_context", "name",
+        "previous_context", "name", "parent_context",
         "_resource_usage",
         "usage_start",
         "main_thread", "alive",
@@ -183,7 +189,7 @@ class LoggingContext(object):
 
     sentinel = Sentinel()
 
-    def __init__(self, name=None):
+    def __init__(self, name=None, parent_context=None):
         self.previous_context = LoggingContext.current_context()
         self.name = name
 
@@ -199,6 +205,8 @@ class LoggingContext(object):
         self.tag = ""
         self.alive = True
 
+        self.parent_context = parent_context
+
     def __str__(self):
         return "%s@%x" % (self.name, id(self))
 
@@ -236,6 +244,10 @@ class LoggingContext(object):
                 self.previous_context, old_context
             )
         self.alive = True
+
+        if self.parent_context is not None:
+            self.parent_context.copy_to(self)
+
         return self
 
     def __exit__(self, type, value, traceback):
@@ -257,6 +269,13 @@ class LoggingContext(object):
         self.previous_context = None
         self.alive = False
 
+        # if we have a parent, pass our CPU usage stats on
+        if self.parent_context is not None:
+            self.parent_context._resource_usage += self._resource_usage
+
+            # reset them in case we get entered again
+            self._resource_usage.reset()
+
     def copy_to(self, record):
         """Copy logging fields from this context to a log record or
         another LoggingContext