338 commits

Author	SHA1	Message	Date
Renaud	e6f99fa3b1	Merge pull request #69961 from r-ryantm/auto-update/star ... star: 2.7.1a -> 2.7.2b	2019-10-13 17:10:23 +02:00
scalavision	3d860972ee	delly: init at 0.8.1 (#70871)	2019-10-10 22:08:45 -04:00
Linus Heckemann	5aa4b19946	treewide: mark some broken packages as broken ... Refs: e675498026 1e9cc5b984 793a2fe1e8 c19cf65261 f6544d618f	2019-10-08 17:14:26 +02:00
Bruno Bzeznik	1ba3f3f00f	SPAdes: init at 3.13.1 (#63082)	2019-10-03 09:18:48 +00:00
Ryan Mulligan	8519cd1aa0	Merge pull request #69735 from r-ryantm/auto-update/picard-tools ... picard-tools: 2.20.5 -> 2.20.8	2019-09-29 15:44:33 -07:00
R. RyanTM	de95a92384	star: 2.7.1a -> 2.7.2b ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/star/versions	2019-09-28 21:09:40 -07:00
R. RyanTM	8c397c2bc2	picard-tools: 2.20.5 -> 2.20.8 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions	2019-09-27 18:25:22 -07:00
Aaron Andersen	af5176b430	Merge pull request #63117 from bzizou/macse ... macse: init at 2.03	2019-09-27 17:26:07 -04:00
Bruno Bzeznik	e4108becbe	macse: init at 2.03	2019-09-24 08:24:07 +02:00
Miguel Madrid Mencía	148c82e07e	maintainer: mimadrid: update github username and personal data	2019-09-14 12:15:46 +02:00
Linus Heckemann	f6182da2c6	ants: use itk 4.x	2019-09-13 11:54:21 +02:00
volth	7b8fb5c06c	treewide: remove redundant quotes	2019-09-08 23:38:31 +00:00
Frederik Rietdijk	5f4734b1dd	Merge remote-tracking branch 'upstream/gcc-8' into staging-next ... Earlier the gcc8 branch was merged instead of the gcc-8 branch (note the dash)...	2019-09-08 20:44:26 +02:00
Frederik Rietdijk	66bc7fc1b3	Merge master into staging-next	2019-09-06 22:46:05 +02:00
Justin Bedo	6beabe7d2c	bedtools: 2.28.0 -> 2.29.0	2019-09-06 21:23:15 +02:00
Jan Tojnar	cdf426488b	Merge branch 'master' into staging-next ... Fixed trivial conflicts caused by removing rec.	2019-09-06 03:20:09 +02:00
Justin Bedo	3f83cbf538	xenomapper: init 1.0.2	2019-09-05 20:50:22 +10:00
Franz Pletz	de85797565	Merge remote-tracking branch 'origin/master' into gcc-8	2019-09-03 22:15:07 +02:00
Vladimír Čunát	f21211ebfe	Merge branch 'master' into staging	2019-09-02 23:25:24 +02:00
Tadeo Kondrak	2aa9b655f4	kallisto: 0.43.1 -> 0.46.0	2019-08-31 14:06:31 -06:00
Frederik Rietdijk	98ef78326d	Merge staging-next into staging	2019-08-31 18:07:33 +02:00
Frederik Rietdijk	96e5474329	Merge master into staging-next	2019-08-31 18:04:31 +02:00
Lassulus	a8d26fc34a	Merge pull request #63127 from bzizou/trimal ... trimal: init at 1.4.1	2019-08-31 13:04:41 +02:00
Frederik Rietdijk	ad1d58c622	Merge staging-next into staging	2019-08-31 10:04:20 +02:00
Frederik Rietdijk	fc74ba8291	Merge master into staging-next	2019-08-31 09:50:38 +02:00
volth	08f68313a4	treewide: remove redundant rec	2019-08-28 11:07:32 +00:00
Léo Gaspard	8a4721d606	Merge pull request #64669 from luispedro/add_sortmerna ... sortmerna: init at 3.0.3	2019-08-27 17:19:53 +02:00
Luis Pedro Coelho	bc22c2e07f	sortmerna: init at 3.0.3 ... This is a useful package in bioinformatics, namely in processing short-read sequencing data from metagenomes	2019-08-27 00:37:43 +02:00
Robin Gloster	616b8343c4	Merge remote-tracking branch 'upstream/master' into gcc-8	2019-08-25 18:55:46 +02:00
Vladimír Čunát	2e6bf42a22	Merge branch 'master' into staging-next ... There ver very many conflicts, basically all due to name -> pname+version. Fortunately, almost everything was auto-resolved by kdiff3, and for now I just fixed up a couple evaluation problems, as verified by the tarball job. There might be some fallback to these conflicts, but I believe it should be minimal. Hydra nixpkgs: ?compare=1538299	2019-08-24 08:55:37 +02:00
R. RyanTM	41571dc81a	picard-tools: 2.20.4 -> 2.20.5 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions	2019-08-19 21:40:40 -07:00
volth	46420bbaa3	treewide: name -> pname (easy cases) (#66585) ... treewide replacement of stdenv.mkDerivation rec { name = "*-${version}"; version = "*"; to pname	2019-08-15 13:41:18 +01:00
R. RyanTM	3bfd09b76d	picard-tools: 2.20.3 -> 2.20.4 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions	2019-08-04 23:04:42 -07:00
Robin Gloster	c6f1c9044b	Merge pull request #63282 from jbedo/strelka ... strelka: 2.9.5 -> 2.9.10	2019-08-01 23:44:58 +00:00
lewo	481bb449a2	Merge pull request #64897 from bzizou/est-sfs ... est-sfs: init at 2.03	2019-07-22 22:52:16 +02:00
Justin Bedo	11ed86d873	bedtools: 2.27.1 -> 2.28.0	2019-07-20 14:15:38 +02:00
R. RyanTM	9a6f0ca8b7	stacks: 2.4 -> 2.41 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/stacks/versions	2019-07-17 09:34:10 +02:00
Ryan Mulligan	e7920cbcfc	Merge pull request #64862 from r-ryantm/auto-update/picard-tools ... picard-tools: 2.20.2 -> 2.20.3	2019-07-16 20:04:43 -07:00
Bruno Bzeznik	9a22c8c697	est-sfs: init at 2.03	2019-07-16 13:55:59 +02:00
R. RyanTM	b7fc14d8e6	picard-tools: 2.20.2 -> 2.20.3 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions	2019-07-15 21:46:51 -07:00
worldofpeace	7ce0cc0a6a	Merge pull request #64324 from jbedo/hisat2 ... hisat2: fix missing perl dependency	2019-07-13 13:21:11 -04:00
Ryan Mulligan	508ae42a0f	treewide: fix redirect URLs	2019-07-10 12:52:51 -07:00
Justin Bedo	d2d449cea5	hisat2: fix missing perl dependency	2019-07-05 10:29:51 +10:00
markuskowa	a07d045b00	Merge pull request #63488 from jbedo/octopus ... octopus: init 0.6.3-beta	2019-06-27 12:43:25 +02:00
royneary	d162165350	mosdepth: 0.2.3 -> 0.2.6	2019-06-22 22:41:59 +02:00
Justin Bedo	b8b71aaaf9	octopus: init 0.6.3-beta	2019-06-19 23:09:33 +10:00
Linus Heckemann	2458209c3e	dcm2niix: 1.0.20170130 -> 1.0.20190410	2019-06-18 22:12:40 +02:00
Justin Bedo	1be8ba08d3	strelka: 2.9.5 -> 2.9.10	2019-06-17 16:09:25 +10:00
Franz Pletz	394bee72db	ants: fix build with gcc8	2019-06-17 07:26:00 +02:00
volth	f3282c8d1e	treewide: remove unused variables (#63177) ... * treewide: remove unused variables * making ofborg happy	2019-06-16 19:59:05 +00:00